Click here to switch to the map view.

The map label for this gene is yohD [H]

Identifier: 110634828

GI number: 110634828

Start: 2665484

End: 2666068

Strand: Direct

Name: yohD [H]

Synonym: Meso_2487

Alternate gene names: 110634828

Gene position: 2665484-2666068 (Clockwise)

Preceding gene: 110634825

Following gene: 110634830

Centisome position: 60.41

GC content: 55.38

Gene sequence:

>585_bases
ATGATCGATGCGATTCACCTTCTTATCGAGCGCTTTGGATTGATTGCCGTCTTCCTGGGCTGCGTCGCCGAAGGCGAAAG
CGTAGCCATCCTTGGCGGTTTTTTTGCCCATCAGGGGCTGCTTGAAACGTGGCAGGTGATCGCAATGGCCTTCGCCGGGT
CCTTCATGAGCGATACGCTTTTCTTCCTGGCCGGAAAATACTTCTCAGGCAGTTCCATGGTACGGAAGGCGCGCCAAAAG
CCCGCCTTCTCCTATGCCTGCCGGATGGTAGAGCGGTATCCTGCGCCTTATGTCCTCATCAACCGCTATGTTTATGGTTT
CCGGCTCATTGGCGGTGTCGTAGCTGGCCTTTCCAGTATCAGCCTGCCGAAATTCATGGCTCTCAATGCTGCTTCCTCGT
TGATTTGGGCGCTCCTCTTCATCGGTATCGGATATGTCTTCGGCCTGGGCGCTGAACAGCTCGTCGGCGGGGAACTTGCC
AAGCATGAGCGCCTTCTGTTCGGTTTTGGATTCTGCCTGATTGGGATAGGCGCGGGGTGGTATGCCACGCGCAGATTCAG
CCGGTATTTCCTTGGGCAGATTTAA

Upstream 100 bases:

>100_bases
CGATGGAAAACTCACCGCGCAGGCCTTCCCCTTGCCCGCCGCAATCACCTGTGGCGAATTCGTCTGGTTCTCCCGTATTG
CACCAGAATGGAAACCGTTG

Downstream 100 bases:

>100_bases
GAACGCATGACCTGCGGGAACGCGACGGCTGAAACGGTCGGCGCTGCGCGTGCTGTTCACGGCCAGGCAGCGAAGGAATG
ACCGCTATGCGAGCGCAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MIDAIHLLIERFGLIAVFLGCVAEGESVAILGGFFAHQGLLETWQVIAMAFAGSFMSDTLFFLAGKYFSGSSMVRKARQK
PAFSYACRMVERYPAPYVLINRYVYGFRLIGGVVAGLSSISLPKFMALNAASSLIWALLFIGIGYVFGLGAEQLVGGELA
KHERLLFGFGFCLIGIGAGWYATRRFSRYFLGQI

Sequences:

>Translated_194_residues
MIDAIHLLIERFGLIAVFLGCVAEGESVAILGGFFAHQGLLETWQVIAMAFAGSFMSDTLFFLAGKYFSGSSMVRKARQK
PAFSYACRMVERYPAPYVLINRYVYGFRLIGGVVAGLSSISLPKFMALNAASSLIWALLFIGIGYVFGLGAEQLVGGELA
KHERLLFGFGFCLIGIGAGWYATRRFSRYFLGQI
>Mature_194_residues
MIDAIHLLIERFGLIAVFLGCVAEGESVAILGGFFAHQGLLETWQVIAMAFAGSFMSDTLFFLAGKYFSGSSMVRKARQK
PAFSYACRMVERYPAPYVLINRYVYGFRLIGGVVAGLSSISLPKFMALNAASSLIWALLFIGIGYVFGLGAEQLVGGELA
KHERLLFGFGFCLIGIGAGWYATRRFSRYFLGQI

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=144, Percent_Identity=35.4166666666667, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 21257; Mature: 21257

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDAIHLLIERFGLIAVFLGCVAEGESVAILGGFFAHQGLLETWQVIAMAFAGSFMSDTL
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFLAGKYFSGSSMVRKARQKPAFSYACRMVERYPAPYVLINRYVYGFRLIGGVVAGLSSI
HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
SLPKFMALNAASSLIWALLFIGIGYVFGLGAEQLVGGELAKHERLLFGFGFCLIGIGAGW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCH
YATRRFSRYFLGQI
HHHHHHHHHHHCCC
>Mature Secondary Structure
MIDAIHLLIERFGLIAVFLGCVAEGESVAILGGFFAHQGLLETWQVIAMAFAGSFMSDTL
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFLAGKYFSGSSMVRKARQKPAFSYACRMVERYPAPYVLINRYVYGFRLIGGVVAGLSSI
HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
SLPKFMALNAASSLIWALLFIGIGYVFGLGAEQLVGGELAKHERLLFGFGFCLIGIGAGW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCH
YATRRFSRYFLGQI
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]