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The map label for this gene is fdhD [H]

Identifier: 110634772

GI number: 110634772

Start: 2607425

End: 2608318

Strand: Direct

Name: fdhD [H]

Synonym: Meso_2431

Alternate gene names: 110634772

Gene position: 2607425-2608318 (Clockwise)

Preceding gene: 110634767

Following gene: 110634773

Centisome position: 59.09

GC content: 63.31

Gene sequence:

>894_bases
ATGCATCAGATAACAGGCCGGCCGAACCACTCCACGGTCATGCCGGACCCTCAGGACCCGCGGCTGACGGAGCTGGTCGA
GGGCGTCGACCATACGGGCGAGGCGGTGCAGGTGCGCGTGCCGGTGGAGCGCGCCTTGACCCTTTATCTCAATGCGCAGG
AGATCGTCACCATGATGACGATCAACGACTACCCCGAATATCTCGCGCTCGGCTACCTTCTGAACCAGAACATGCTCCTG
TCCGACGATGTGGTGACCGGCGTCGAGTATGACGAGGACCTGCAGGTCGTGGTGGTCCGAACCGAGCGCAACACCGACTA
CGAGCAGAAGCTCAAGAAGCGGACGCAGACCTCGGGCTGCGCCCAGGGCACGGCTTTCGGCGACCTGCTCGAGGCGATTG
AGGACATCACGCTTCCCGCCGCGGAACTGCGCACCTCCTGGCTCTACGAGCTGACGCGCAAGATCAACATCACTCCCTCG
CTCTATCTGGAGGCAGGAGCCATCCATGGCTGCGTCCTTTGCAAGGAGGGAGAGGCGATCTGCTATATGGAGGACGTGGG
CCGCCACAACGCCGTCGACAAGATCGCCGGCTGGATGTACCGGCATGGAGTCGATCCGGCCGACAAAATTCTCTACACCA
CCGGACGGCTGACTTCCGAGATGACGATCAAGACCGTGCGGATGGGCATCCCCGTCCTGGTCTCCCGTTCCGGCTTCACG
GCCTGGGGCGTGGCGCTGGCCCGCGAGGTGGGACTGACGCTGGTTGGCCGCGCGCGCGGCAAGCGTTTCATCGCGCTTTC
CGGACAGGAGCGGATCGTCTTTGACCAGGACCTTGCGTCGGTGAACGAAGAAGCACCGCGCCACCGCCGCAAAGGCGCAG
AGCATGATGAGTAA

Upstream 100 bases:

>100_bases
TACCAATCCTATGGCACTTTGGTCCTTCGTTTGAACAGGCTATAAGGTATAGGGTCAAGCCTGAGCCGGCGAGAGCCAGA
ATATGATCAACGAGGCTGCG

Downstream 100 bases:

>100_bases
TCTGCCTTCCACCTTGTGCGTGGTGCTGGCCGGCGGCCTGGGCCGGCGCATGGGCGGAGGGGATAAGCCAATGCGCGAGA
TCGGCGGACGTGCGATCCTA

Product: formate dehydrogenase family accessory protein FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MHQITGRPNHSTVMPDPQDPRLTELVEGVDHTGEAVQVRVPVERALTLYLNAQEIVTMMTINDYPEYLALGYLLNQNMLL
SDDVVTGVEYDEDLQVVVVRTERNTDYEQKLKKRTQTSGCAQGTAFGDLLEAIEDITLPAAELRTSWLYELTRKINITPS
LYLEAGAIHGCVLCKEGEAICYMEDVGRHNAVDKIAGWMYRHGVDPADKILYTTGRLTSEMTIKTVRMGIPVLVSRSGFT
AWGVALAREVGLTLVGRARGKRFIALSGQERIVFDQDLASVNEEAPRHRRKGAEHDE

Sequences:

>Translated_297_residues
MHQITGRPNHSTVMPDPQDPRLTELVEGVDHTGEAVQVRVPVERALTLYLNAQEIVTMMTINDYPEYLALGYLLNQNMLL
SDDVVTGVEYDEDLQVVVVRTERNTDYEQKLKKRTQTSGCAQGTAFGDLLEAIEDITLPAAELRTSWLYELTRKINITPS
LYLEAGAIHGCVLCKEGEAICYMEDVGRHNAVDKIAGWMYRHGVDPADKILYTTGRLTSEMTIKTVRMGIPVLVSRSGFT
AWGVALAREVGLTLVGRARGKRFIALSGQERIVFDQDLASVNEEAPRHRRKGAEHDE
>Mature_297_residues
MHQITGRPNHSTVMPDPQDPRLTELVEGVDHTGEAVQVRVPVERALTLYLNAQEIVTMMTINDYPEYLALGYLLNQNMLL
SDDVVTGVEYDEDLQVVVVRTERNTDYEQKLKKRTQTSGCAQGTAFGDLLEAIEDITLPAAELRTSWLYELTRKINITPS
LYLEAGAIHGCVLCKEGEAICYMEDVGRHNAVDKIAGWMYRHGVDPADKILYTTGRLTSEMTIKTVRMGIPVLVSRSGFT
AWGVALAREVGLTLVGRARGKRFIALSGQERIVFDQDLASVNEEAPRHRRKGAEHDE

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=264, Percent_Identity=26.1363636363636, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 33186; Mature: 33186

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQITGRPNHSTVMPDPQDPRLTELVEGVDHTGEAVQVRVPVERALTLYLNAQEIVTMMT
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECHHHEEEEEECHHHEEEEEE
INDYPEYLALGYLLNQNMLLSDDVVTGVEYDEDLQVVVVRTERNTDYEQKLKKRTQTSGC
ECCCHHHHHHHHHHCCCEEECCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
AQGTAFGDLLEAIEDITLPAAELRTSWLYELTRKINITPSLYLEAGAIHGCVLCKEGEAI
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHEEEECCCEEEEEEEECCCEE
CYMEDVGRHNAVDKIAGWMYRHGVDPADKILYTTGRLTSEMTIKTVRMGIPVLVSRSGFT
EEHHHCCCCCHHHHHHHHHHHCCCCHHHHEEEECCCCCHHHHHHHHHCCCCEEEECCCCH
AWGVALAREVGLTLVGRARGKRFIALSGQERIVFDQDLASVNEEAPRHRRKGAEHDE
HHHHHHHHHHCEEEEECCCCCEEEEECCCCEEEECHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHQITGRPNHSTVMPDPQDPRLTELVEGVDHTGEAVQVRVPVERALTLYLNAQEIVTMMT
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECHHHEEEEEECHHHEEEEEE
INDYPEYLALGYLLNQNMLLSDDVVTGVEYDEDLQVVVVRTERNTDYEQKLKKRTQTSGC
ECCCHHHHHHHHHHCCCEEECCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
AQGTAFGDLLEAIEDITLPAAELRTSWLYELTRKINITPSLYLEAGAIHGCVLCKEGEAI
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHEEEECCCEEEEEEEECCCEE
CYMEDVGRHNAVDKIAGWMYRHGVDPADKILYTTGRLTSEMTIKTVRMGIPVLVSRSGFT
EEHHHCCCCCHHHHHHHHHHHCCCCHHHHEEEECCCCCHHHHHHHHHCCCCEEEECCCCH
AWGVALAREVGLTLVGRARGKRFIALSGQERIVFDQDLASVNEEAPRHRRKGAEHDE
HHHHHHHHHHCEEEEECCCCCEEEEECCCCEEEECHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]