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The map label for this gene is ypdF [C]

Identifier: 110634760

GI number: 110634760

Start: 2591533

End: 2592711

Strand: Direct

Name: ypdF [C]

Synonym: Meso_2419

Alternate gene names: 110634760

Gene position: 2591533-2592711 (Clockwise)

Preceding gene: 110634759

Following gene: 110634761

Centisome position: 58.73

GC content: 63.27

Gene sequence:

>1179_bases
ATGATCGAGCTTCCCTTCGCCCGCCTCGAATATAGAAACAGGCTTCAGGCCATTCGCGCGGAGATGACGCGGCGCAACCT
CGATCTTCTGATCGTCAACGACATCGCCAACCAGCATTACATCACGGGCTATGACGGCTGGTCGTTCTACACGCCGCAAG
TCGTGCTCGTGCCTCTGGTCGATGAGGAGCCGGTCTGGATTGGCCGCGCCATGGACGCCGCCGGCGGTCTGCTGACCGCC
TGGATGAAACCGGAAAACATCGTCGGCTACCCCGAGGACTACGTCCAGCGCGCCGATCGGCACCCGATGGATTGGATTGC
TGCTTGGATTGCCAGGAAGGGCTGGGGCCGCGGCAATATCGGAGTCGAGCTTGAAGCCTACTACTATTCGCCGAAAGCGC
ATGCCCGCCTGACCGCCGGCCTGCCGAACGCCACCCTCCACGATGCCGACCTCCTGGTCAACTGGATCCGCAGCGTCAAG
TCCGCCGCCGAGATCGACTATCTGCGCAAAGCCTCGCGCCTAGCCGAAGCGGCGATGACCGCAGCCTATGGCGCCGTCGC
CCCCGGCGTGCGCGAATGCGACGCGATTGCCAAAATCCAGGCCGCACAGGTCGCTGGCTCGCCGGACTTCGCGGGCGACA
TTACCGCGCTTCCCCCGACCATTCTCGGCGGCGAAAACGCCTCCGCCCCCCATCTCATGTGGAGCGACCGCCGCTTTGGG
GAAAATGAAACCGTCGCCCTTGAGCTTGCGGGGGCTGTGCGCCGCTACACCGCCGGGCTCGCAAGAACGCTCCAGCTCGG
CAAGATGCCGGCCAAGGTCAGCGATACGGGCAAGGCCGTTCTCGAAGGCATGGAAGCCGTTCTCGCCACCATCAAGCCTG
ACGTGACGGCCGAGGCGGTCGAGGCGAGCTGGCGCCAGGTCATACAGCGTTATGGCCTTAAGAAGGAGTCGCGCATCGGC
TATTCAATCGGTGTAGCCTATCCGCCGGATTGGGGTGAGCACACGATCAGCCTGCGCCCCGGCGACCAGACCATCCTTAA
ACCGGGCAACGTGCTGCATGCCATCCTCGGCATGTGGATGGATGGCTGGGGCATCGAGGTGAGCGAGACGATTCTCGTCA
CGGAGAATGGCTGCGAGACGCTGACTGACTTTCCTCGAGGGATCCATGTCAAAGCCTGA

Upstream 100 bases:

>100_bases
CGCGACCCTATGAAACCACAAGCCTACGCGCCGGAAAATCATTATCGTTTTGGAAAAGCCTCGGCCTCATAACCAGCCCA
TCGAACAGGACGTGTTCTCC

Downstream 100 bases:

>100_bases
TTCCAACGCAGTGATGATGGACGCAGCACTGGAACGCCGGATGATCGAAATCCGGCGTCACCTTCACCGCAATCCCGAGC
TGTCGAACCAGGAACGCGAG

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MIELPFARLEYRNRLQAIRAEMTRRNLDLLIVNDIANQHYITGYDGWSFYTPQVVLVPLVDEEPVWIGRAMDAAGGLLTA
WMKPENIVGYPEDYVQRADRHPMDWIAAWIARKGWGRGNIGVELEAYYYSPKAHARLTAGLPNATLHDADLLVNWIRSVK
SAAEIDYLRKASRLAEAAMTAAYGAVAPGVRECDAIAKIQAAQVAGSPDFAGDITALPPTILGGENASAPHLMWSDRRFG
ENETVALELAGAVRRYTAGLARTLQLGKMPAKVSDTGKAVLEGMEAVLATIKPDVTAEAVEASWRQVIQRYGLKKESRIG
YSIGVAYPPDWGEHTISLRPGDQTILKPGNVLHAILGMWMDGWGIEVSETILVTENGCETLTDFPRGIHVKA

Sequences:

>Translated_392_residues
MIELPFARLEYRNRLQAIRAEMTRRNLDLLIVNDIANQHYITGYDGWSFYTPQVVLVPLVDEEPVWIGRAMDAAGGLLTA
WMKPENIVGYPEDYVQRADRHPMDWIAAWIARKGWGRGNIGVELEAYYYSPKAHARLTAGLPNATLHDADLLVNWIRSVK
SAAEIDYLRKASRLAEAAMTAAYGAVAPGVRECDAIAKIQAAQVAGSPDFAGDITALPPTILGGENASAPHLMWSDRRFG
ENETVALELAGAVRRYTAGLARTLQLGKMPAKVSDTGKAVLEGMEAVLATIKPDVTAEAVEASWRQVIQRYGLKKESRIG
YSIGVAYPPDWGEHTISLRPGDQTILKPGNVLHAILGMWMDGWGIEVSETILVTENGCETLTDFPRGIHVKA
>Mature_392_residues
MIELPFARLEYRNRLQAIRAEMTRRNLDLLIVNDIANQHYITGYDGWSFYTPQVVLVPLVDEEPVWIGRAMDAAGGLLTA
WMKPENIVGYPEDYVQRADRHPMDWIAAWIARKGWGRGNIGVELEAYYYSPKAHARLTAGLPNATLHDADLLVNWIRSVK
SAAEIDYLRKASRLAEAAMTAAYGAVAPGVRECDAIAKIQAAQVAGSPDFAGDITALPPTILGGENASAPHLMWSDRRFG
ENETVALELAGAVRRYTAGLARTLQLGKMPAKVSDTGKAVLEGMEAVLATIKPDVTAEAVEASWRQVIQRYGLKKESRIG
YSIGVAYPPDWGEHTISLRPGDQTILKPGNVLHAILGMWMDGWGIEVSETILVTENGCETLTDFPRGIHVKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 43060; Mature: 43060

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELPFARLEYRNRLQAIRAEMTRRNLDLLIVNDIANQHYITGYDGWSFYTPQVVLVPLV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCEECCCEEEEEEE
DEEPVWIGRAMDAAGGLLTAWMKPENIVGYPEDYVQRADRHPMDWIAAWIARKGWGRGNI
CCCCEEEEHHHHHCCCEEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
GVELEAYYYSPKAHARLTAGLPNATLHDADLLVNWIRSVKSAAEIDYLRKASRLAEAAMT
CEEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAYGAVAPGVRECDAIAKIQAAQVAGSPDFAGDITALPPTILGGENASAPHLMWSDRRFG
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEEECCCCCC
ENETVALELAGAVRRYTAGLARTLQLGKMPAKVSDTGKAVLEGMEAVLATIKPDVTAEAV
CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
EASWRQVIQRYGLKKESRIGYSIGVAYPPDWGEHTISLRPGDQTILKPGNVLHAILGMWM
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHC
DGWGIEVSETILVTENGCETLTDFPRGIHVKA
CCCCCEEEEEEEEECCCCHHHHHCCCCEEECC
>Mature Secondary Structure
MIELPFARLEYRNRLQAIRAEMTRRNLDLLIVNDIANQHYITGYDGWSFYTPQVVLVPLV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCEECCCEEEEEEE
DEEPVWIGRAMDAAGGLLTAWMKPENIVGYPEDYVQRADRHPMDWIAAWIARKGWGRGNI
CCCCEEEEHHHHHCCCEEEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
GVELEAYYYSPKAHARLTAGLPNATLHDADLLVNWIRSVKSAAEIDYLRKASRLAEAAMT
CEEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAYGAVAPGVRECDAIAKIQAAQVAGSPDFAGDITALPPTILGGENASAPHLMWSDRRFG
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEEECCCCCC
ENETVALELAGAVRRYTAGLARTLQLGKMPAKVSDTGKAVLEGMEAVLATIKPDVTAEAV
CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
EASWRQVIQRYGLKKESRIGYSIGVAYPPDWGEHTISLRPGDQTILKPGNVLHAILGMWM
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHC
DGWGIEVSETILVTENGCETLTDFPRGIHVKA
CCCCCEEEEEEEEECCCCHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]