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The map label for this gene is yoaB [C]

Identifier: 110634742

GI number: 110634742

Start: 2557407

End: 2557757

Strand: Reverse

Name: yoaB [C]

Synonym: Meso_2400

Alternate gene names: 110634742

Gene position: 2557757-2557407 (Counterclockwise)

Preceding gene: 110634743

Following gene: 110634741

Centisome position: 57.97

GC content: 57.55

Gene sequence:

>351_bases
ATGAACGATATATCCCGGTTGCCAGGCACGGCCCGCATGAGTTCGGCCGTGATTGTGAACGGCATTGTTTACACAAAGGG
GATTACGGCCCGCGGCGGGCCCGTAGATATTGCCGGGCAGACCCGCAACTGCCTGGACCAACTCGATGACCTGCTTGCTC
AGGCGGGGACTTCACGCAGCAAGCTTATCAAGGTGATGATCTGGCTCAAGGATATGGCAGACTTCGAGGCAGTGAATGCT
GTGTATGACGCCTGGGTTGAACCGGGGCATCAGCCTGTTCGTGCGTGTGTCGAGGCGAAACTTGCTGATCCCTCGCTTCT
GATCGAGGTCCAAGCCGAAGCGAGCCTTTGA

Upstream 100 bases:

>100_bases
CCGAGCTAAGGAATGCGATGGTGATCGGCGGATGGAAGGCGCTATCTGATTTGGATCGGTCGGCAGTCACACGGCTCCCG
CAGTAGAAAGAGAGGCATTC

Downstream 100 bases:

>100_bases
AAAAATACCTCCCGAGGATGATTTAGGAGTTTTACCGTCATCTTGTTTTTACATCAGACATAGAATTGCGACGGCGGTCA
GCCGCTACATGATGCTCTGG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MNDISRLPGTARMSSAVIVNGIVYTKGITARGGPVDIAGQTRNCLDQLDDLLAQAGTSRSKLIKVMIWLKDMADFEAVNA
VYDAWVEPGHQPVRACVEAKLADPSLLIEVQAEASL

Sequences:

>Translated_116_residues
MNDISRLPGTARMSSAVIVNGIVYTKGITARGGPVDIAGQTRNCLDQLDDLLAQAGTSRSKLIKVMIWLKDMADFEAVNA
VYDAWVEPGHQPVRACVEAKLADPSLLIEVQAEASL
>Mature_116_residues
MNDISRLPGTARMSSAVIVNGIVYTKGITARGGPVDIAGQTRNCLDQLDDLLAQAGTSRSKLIKVMIWLKDMADFEAVNA
VYDAWVEPGHQPVRACVEAKLADPSLLIEVQAEASL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=113, Percent_Identity=37.1681415929204, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12452; Mature: 12452

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDISRLPGTARMSSAVIVNGIVYTKGITARGGPVDIAGQTRNCLDQLDDLLAQAGTSRS
CCCCCCCCCCCHHCCHHHCCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCHH
KLIKVMIWLKDMADFEAVNAVYDAWVEPGHQPVRACVEAKLADPSLLIEVQAEASL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
>Mature Secondary Structure
MNDISRLPGTARMSSAVIVNGIVYTKGITARGGPVDIAGQTRNCLDQLDDLLAQAGTSRS
CCCCCCCCCCCHHCCHHHCCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCHH
KLIKVMIWLKDMADFEAVNAVYDAWVEPGHQPVRACVEAKLADPSLLIEVQAEASL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA