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The map label for this gene is rnk [C]

Identifier: 110634551

GI number: 110634551

Start: 2351174

End: 2351581

Strand: Direct

Name: rnk [C]

Synonym: Meso_2202

Alternate gene names: 110634551

Gene position: 2351174-2351581 (Clockwise)

Preceding gene: 110634550

Following gene: 110634552

Centisome position: 53.29

GC content: 59.31

Gene sequence:

>408_bases
ATGCACAGTAAGCGCAAGCCAAGCATCACAATTTCAAGAACGGACCACGACCGGCTTCTGGGGCTGGCGACGGCAATGGA
GAACCGGGATCCGGTGCTCGCCGAAACGATGATCTCAGAGTTGGAGCGGGCCCGCGTCGTGGAAGATGCGGCCTTGCCTG
ACACAGTCGTGCGGATGGGTTCAACTTTGACTTATACCGCTGATGACGGCGAGCCGCAGACCGTTTCCCTCGTCTATCCC
GGAGAAGCTGACATCGCGCAGGGAAGGGTTTCAGTGACAACGCCCGTCGGAACCGCGCTGATCGGCCTTTCCGTGAACCA
GACGATCGACTGGACGGCGCGTGACGGTCGGGTTCACCGCCTGAAGGTCATTAACATCAGCAAGTCTGGTAGCGACGGAC
AGTCATGA

Upstream 100 bases:

>100_bases
TCGGGGCGCGATGGGCCGGTTCTAATCGGCGGCTCGCAGCAGGCGCATCCAGCAAGAACAAGAAATTGGCCGGGCAGATC
TCGGCTCAATGGGTGAACCT

Downstream 100 bases:

>100_bases
GCCTGAGGCTCCTCTTCTTCGCAGGCACTCTCCAAAACGGCAACAAGCCCCTGCGCCGATAAACGCTGGCGCAGGGGTGG
TCTCACCAGTTTGTCAACTT

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: Nucleoside Diphosphate Kinase Regulator; Regulator Of Nucleoside Diphosphate Kinase; Transcription Elongation Factor; Transcription Elongation Factor GreA/GreB Region; Transcription Elongation Factor GreA/GreB; Regulatory Protein

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MHSKRKPSITISRTDHDRLLGLATAMENRDPVLAETMISELERARVVEDAALPDTVVRMGSTLTYTADDGEPQTVSLVYP
GEADIAQGRVSVTTPVGTALIGLSVNQTIDWTARDGRVHRLKVINISKSGSDGQS

Sequences:

>Translated_135_residues
MHSKRKPSITISRTDHDRLLGLATAMENRDPVLAETMISELERARVVEDAALPDTVVRMGSTLTYTADDGEPQTVSLVYP
GEADIAQGRVSVTTPVGTALIGLSVNQTIDWTARDGRVHRLKVINISKSGSDGQS
>Mature_135_residues
MHSKRKPSITISRTDHDRLLGLATAMENRDPVLAETMISELERARVVEDAALPDTVVRMGSTLTYTADDGEPQTVSLVYP
GEADIAQGRVSVTTPVGTALIGLSVNQTIDWTARDGRVHRLKVINISKSGSDGQS

Specific function: Rnk And Sspa Can Functionally Replace P.Aeruginosa Alginate Regulatory Gene Algr2. [C]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=122, Percent_Identity=31.1475409836066, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14557; Mature: 14557

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSKRKPSITISRTDHDRLLGLATAMENRDPVLAETMISELERARVVEDAALPDTVVRMG
CCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
STLTYTADDGEPQTVSLVYPGEADIAQGRVSVTTPVGTALIGLSVNQTIDWTARDGRVHR
CEEEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCEEEEEECCCEEEE
LKVINISKSGSDGQS
EEEEEEECCCCCCCC
>Mature Secondary Structure
MHSKRKPSITISRTDHDRLLGLATAMENRDPVLAETMISELERARVVEDAALPDTVVRMG
CCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
STLTYTADDGEPQTVSLVYPGEADIAQGRVSVTTPVGTALIGLSVNQTIDWTARDGRVHR
CEEEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCEEEEEECCCEEEE
LKVINISKSGSDGQS
EEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA