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The map label for this gene is petB [H]

Identifier: 110634514

GI number: 110634514

Start: 2314729

End: 2316015

Strand: Reverse

Name: petB [H]

Synonym: Meso_2165

Alternate gene names: 110634514

Gene position: 2316015-2314729 (Counterclockwise)

Preceding gene: 110634515

Following gene: 110634513

Centisome position: 52.49

GC content: 59.36

Gene sequence:

>1287_bases
ATGAGCGGTGGACATTCTACCTATACACCCAAGACGGGCTTCGGCCGCTGGATAGACGCCCGCCTTCCGCTGCCGCGTCT
CATCTATGATTCTTTCGTGGCCTATCCTGTGCCGCGCAACCTGAACTATGCCTATACGTTCGGCGGCATTCTCAGCCTTA
TGCTGGCGGCGCAGATCCTGACCGGCGTGGTTCTTGCAATGCACTACGCGGCAAACACCGAGCTCGCATTCGGGTCGGTC
GAAAAAATCATGCGCGATGTCAATTCCGGCTGGCTGCTGCGCTATCTGCACGCCAACGGCGCCTCGTTCTTCTTCGTGGC
GGTCTATGTGCACATCTTCCGCGGCCTCTATTACGGTTCCTATAAGGCGCCGCGCGAGCTGCTGTGGATCCTCGGATGCA
TCATTTATCTTCTCATGATGGCGACCGCCTTCATGGGCTATGTGCTGCCTTGGGGCCAGATGAGCTTCTGGGGCGCGACG
GTGATCACCGGTTTCTTCTCGGCCATCCCGCTGGTCGGCGACTGGATCCAGCAGCTGCTCCTCGGCGGGTTCGCGGTGGA
AAACCCCACGCTCAACCGCTTCTTCTCGCTGCATTATCTGCTGCCGTTCATGATCGCGGGCGTCGTCATACTCCATATCT
GGGCGCTGCATGTCACGGGGCAGACCAATCCGACCGGCATCGAGGTGAAGCAGAAGACCGATACGGTGGCCTTCACGCCC
TATGCGACCATCAAAGACGGCTTTGCCATGGTCGTGTTCCTGTTCGTGTTCGCCTATTTCGTCTTCTACATGCCGAACTA
TCTCGGCCATCCCGACAACTATATCGAAGCCGATCCGCTGAAGACGCCGGCCCACATCGTGCCTGAGTGGTACTTCCTGC
CCTTCTACGCGATGCTGCGCGCCATCACCTTCAATATAGGCCCGATCGACTCCAAGCTCGGCGGCGTGCTCGTGATGTTC
GGCTCGATCGCACTGCTGTTCCTCACGCCATGGCTGGATACGTCCAAGGTTCGCTCCGCGGCCTACCGGCCCTGGTACAA
GATCTTCTTCTGGCTGTTCGTTGCGGATGCCATCCTGCTGGGCTGGCTTGGCTCTCGTCCGGCGGAAGGGCTTTATGTGG
CGATGGCGCAGATCGGGACTCTTTACTACTACGCCTTCTTCCTGGTCGTCATGCCGGTTCTCGGTTTGATCGAAACGCCA
CGCCGGCTTCCCAACTCGATCACCGAGGCGGTGCTGGAGAAGAACAAGGCCGGTTCCTTGGCCGCCCAGCCGGTCAGCCA
ACGCTAA

Upstream 100 bases:

>100_bases
CGTCCGCGGTGGACCTGCGCCGGAAAACATGGCCATTCCGGCCTTTCAGTTCATCTCCGACACGGTCGTTCAGATCGGTT
AGGCGAAGGGGGCGCATTTC

Downstream 100 bases:

>100_bases
GCGATGCGCAAGGGGATTTTGGAAATGAGAATGTTTCTCCACGCTCTGGGGGCTCTCGGGCTTGGTCTTGCGCTCGCCAC
CTCAGCCGGGGCTCAGGAAG

Product: cytochrome b/b6-like

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MSGGHSTYTPKTGFGRWIDARLPLPRLIYDSFVAYPVPRNLNYAYTFGGILSLMLAAQILTGVVLAMHYAANTELAFGSV
EKIMRDVNSGWLLRYLHANGASFFFVAVYVHIFRGLYYGSYKAPRELLWILGCIIYLLMMATAFMGYVLPWGQMSFWGAT
VITGFFSAIPLVGDWIQQLLLGGFAVENPTLNRFFSLHYLLPFMIAGVVILHIWALHVTGQTNPTGIEVKQKTDTVAFTP
YATIKDGFAMVVFLFVFAYFVFYMPNYLGHPDNYIEADPLKTPAHIVPEWYFLPFYAMLRAITFNIGPIDSKLGGVLVMF
GSIALLFLTPWLDTSKVRSAAYRPWYKIFFWLFVADAILLGWLGSRPAEGLYVAMAQIGTLYYYAFFLVVMPVLGLIETP
RRLPNSITEAVLEKNKAGSLAAQPVSQR

Sequences:

>Translated_428_residues
MSGGHSTYTPKTGFGRWIDARLPLPRLIYDSFVAYPVPRNLNYAYTFGGILSLMLAAQILTGVVLAMHYAANTELAFGSV
EKIMRDVNSGWLLRYLHANGASFFFVAVYVHIFRGLYYGSYKAPRELLWILGCIIYLLMMATAFMGYVLPWGQMSFWGAT
VITGFFSAIPLVGDWIQQLLLGGFAVENPTLNRFFSLHYLLPFMIAGVVILHIWALHVTGQTNPTGIEVKQKTDTVAFTP
YATIKDGFAMVVFLFVFAYFVFYMPNYLGHPDNYIEADPLKTPAHIVPEWYFLPFYAMLRAITFNIGPIDSKLGGVLVMF
GSIALLFLTPWLDTSKVRSAAYRPWYKIFFWLFVADAILLGWLGSRPAEGLYVAMAQIGTLYYYAFFLVVMPVLGLIETP
RRLPNSITEAVLEKNKAGSLAAQPVSQR
>Mature_427_residues
SGGHSTYTPKTGFGRWIDARLPLPRLIYDSFVAYPVPRNLNYAYTFGGILSLMLAAQILTGVVLAMHYAANTELAFGSVE
KIMRDVNSGWLLRYLHANGASFFFVAVYVHIFRGLYYGSYKAPRELLWILGCIIYLLMMATAFMGYVLPWGQMSFWGATV
ITGFFSAIPLVGDWIQQLLLGGFAVENPTLNRFFSLHYLLPFMIAGVVILHIWALHVTGQTNPTGIEVKQKTDTVAFTPY
ATIKDGFAMVVFLFVFAYFVFYMPNYLGHPDNYIEADPLKTPAHIVPEWYFLPFYAMLRAITFNIGPIDSKLGGVLVMFG
SIALLFLTPWLDTSKVRSAAYRPWYKIFFWLFVADAILLGWLGSRPAEGLYVAMAQIGTLYYYAFFLVVMPVLGLIETPR
RLPNSITEAVLEKNKAGSLAAQPVSQR

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=377, Percent_Identity=46.684350132626, Blast_Score=330, Evalue=1e-90,
Organism=Saccharomyces cerevisiae, GI6226529, Length=374, Percent_Identity=51.0695187165775, Blast_Score=353, Evalue=3e-98,
Organism=Saccharomyces cerevisiae, GI6226532, Length=244, Percent_Identity=52.8688524590164, Blast_Score=251, Evalue=1e-67,
Organism=Saccharomyces cerevisiae, GI6226531, Length=163, Percent_Identity=55.8282208588957, Blast_Score=179, Evalue=8e-46,
Organism=Saccharomyces cerevisiae, GI6226530, Length=147, Percent_Identity=49.6598639455782, Blast_Score=144, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.2

Molecular weight: Translated: 48135; Mature: 48004

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGHSTYTPKTGFGRWIDARLPLPRLIYDSFVAYPVPRNLNYAYTFGGILSLMLAAQIL
CCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHH
TGVVLAMHYAANTELAFGSVEKIMRDVNSGWLLRYLHANGASFFFVAVYVHIFRGLYYGS
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
YKAPRELLWILGCIIYLLMMATAFMGYVLPWGQMSFWGATVITGFFSAIPLVGDWIQQLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGFAVENPTLNRFFSLHYLLPFMIAGVVILHIWALHVTGQTNPTGIEVKQKTDTVAFTP
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCEEECC
YATIKDGFAMVVFLFVFAYFVFYMPNYLGHPDNYIEADPLKTPAHIVPEWYFLPFYAMLR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHH
AITFNIGPIDSKLGGVLVMFGSIALLFLTPWLDTSKVRSAAYRPWYKIFFWLFVADAILL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
GWLGSRPAEGLYVAMAQIGTLYYYAFFLVVMPVLGLIETPRRLPNSITEAVLEKNKAGSL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHCCCCCCC
AAQPVSQR
CCCCCCCC
>Mature Secondary Structure 
SGGHSTYTPKTGFGRWIDARLPLPRLIYDSFVAYPVPRNLNYAYTFGGILSLMLAAQIL
CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHH
TGVVLAMHYAANTELAFGSVEKIMRDVNSGWLLRYLHANGASFFFVAVYVHIFRGLYYGS
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
YKAPRELLWILGCIIYLLMMATAFMGYVLPWGQMSFWGATVITGFFSAIPLVGDWIQQLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGFAVENPTLNRFFSLHYLLPFMIAGVVILHIWALHVTGQTNPTGIEVKQKTDTVAFTP
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCEEECC
YATIKDGFAMVVFLFVFAYFVFYMPNYLGHPDNYIEADPLKTPAHIVPEWYFLPFYAMLR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHH
AITFNIGPIDSKLGGVLVMFGSIALLFLTPWLDTSKVRSAAYRPWYKIFFWLFVADAILL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
GWLGSRPAEGLYVAMAQIGTLYYYAFFLVVMPVLGLIETPRRLPNSITEAVLEKNKAGSL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHCCCCCCC
AAQPVSQR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2560136 [H]