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The map label for this gene is yliC [C]

Identifier: 110634411

GI number: 110634411

Start: 2212556

End: 2213593

Strand: Reverse

Name: yliC [C]

Synonym: Meso_2061

Alternate gene names: 110634411

Gene position: 2213593-2212556 (Counterclockwise)

Preceding gene: 110634412

Following gene: 110634410

Centisome position: 50.17

GC content: 60.4

Gene sequence:

>1038_bases
TTGGCAGGCTTCATAATCCGCCGCCTAGGGACCATGGCGCTTGCGATGTTGTGCCTATCGCTGGCGGTGTTTTATCTCGT
CGATCTGGAACCCAATCTAAAGCGGCTGGCCATCAGTCAGCTCAATATGCGCTCGTCCACCGAAGAGCTGGAGAGCTGGC
TGCAAAGGAATGGCTACCGCCAGAACTTCTTTGTCCGTTACGGACAGTGGTTAGGAGTGATTCCGGAGCAGCCGCGCCCG
GATCCGGCGACGGGGAAGGCCATGCCGCGCTTCTCCTTCTGTCCGGAAGGGGGCCAAGCAGGGTATTCGGGCGTCCTGCA
GGGTGATTTCGGCTGCTCGACCAAGTTCAAGGTGCCGGTCATTCGGAAATTGGTTCCGGCGCTGAAGGCGACCGGGATCC
TGATGTTCTGGGTGATGGCGGTGATGGTGCCTGCCTCGCTCTTCCTCGGCGTTCTGGCGGGCATGCGCGAAGGCAGCCGG
ACCGACCGCACGCTCTCCGCGGCCTCCATCACCACGGCGGCCACGCCTGAATATATTTCCGGCGTCCTCTTCACCGTCGT
TTTTGCCTCCTGGCTCGGCTGGCTCAACGGCTCGGCAGCGTCGGCGACCAATCAGGGCATCAGTTTCTACAATTTCACCC
TGCCGGTGATCACCATGGCGCTTTACGGCACTGGCTATATCGCGCGGATGACCAGGGCTTCGATGGCGGAAGTGATGACC
CAGCAATATATCCGCACCGCCAGGCTCAAGGGGCTGAGCTTCGGCGCCGTGGTGGTCCGCCATGCGCTGCGCAACGCGCT
GATTACACCCTTCACGGTCATCATGCTGCAATTTCCGTGGCTGCTTACGGGCGTGGCGGTCGTCGAGGTGATGTTCCGCT
ATCAGGGGTTCGGATTTACCCTGGTCGAGGCGGCGGCCAATAACGACATTGACCTGCTTCTCGCCTGTTCGCTCATTTCC
GTGTTCGTCGTGCTTTCGACACAGCTTGTTTCCGATCTTGGATACGCGCTGCTCAATCCGCGCATCCGGGTACAGTAG

Upstream 100 bases:

>100_bases
AAGATTCATCCGAGTTTCGAGGTGGATTTCGGAAGGGTGTGGCTGGACGAAGCGTAGGTTACGCTGAAAGGTCTGCCGGC
AGAGGCAGCGGAGCGGATAT

Downstream 100 bases:

>100_bases
AGAACGCCGATGCAATATGAGACGATCGGCGCTTTCGGCATTCTCATCGGCATCGTCGTGCGATTCTGGCCGGTCTGGAT
CGCGCTCGCGATCGTCGTCA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MAGFIIRRLGTMALAMLCLSLAVFYLVDLEPNLKRLAISQLNMRSSTEELESWLQRNGYRQNFFVRYGQWLGVIPEQPRP
DPATGKAMPRFSFCPEGGQAGYSGVLQGDFGCSTKFKVPVIRKLVPALKATGILMFWVMAVMVPASLFLGVLAGMREGSR
TDRTLSAASITTAATPEYISGVLFTVVFASWLGWLNGSAASATNQGISFYNFTLPVITMALYGTGYIARMTRASMAEVMT
QQYIRTARLKGLSFGAVVVRHALRNALITPFTVIMLQFPWLLTGVAVVEVMFRYQGFGFTLVEAAANNDIDLLLACSLIS
VFVVLSTQLVSDLGYALLNPRIRVQ

Sequences:

>Translated_345_residues
MAGFIIRRLGTMALAMLCLSLAVFYLVDLEPNLKRLAISQLNMRSSTEELESWLQRNGYRQNFFVRYGQWLGVIPEQPRP
DPATGKAMPRFSFCPEGGQAGYSGVLQGDFGCSTKFKVPVIRKLVPALKATGILMFWVMAVMVPASLFLGVLAGMREGSR
TDRTLSAASITTAATPEYISGVLFTVVFASWLGWLNGSAASATNQGISFYNFTLPVITMALYGTGYIARMTRASMAEVMT
QQYIRTARLKGLSFGAVVVRHALRNALITPFTVIMLQFPWLLTGVAVVEVMFRYQGFGFTLVEAAANNDIDLLLACSLIS
VFVVLSTQLVSDLGYALLNPRIRVQ
>Mature_344_residues
AGFIIRRLGTMALAMLCLSLAVFYLVDLEPNLKRLAISQLNMRSSTEELESWLQRNGYRQNFFVRYGQWLGVIPEQPRPD
PATGKAMPRFSFCPEGGQAGYSGVLQGDFGCSTKFKVPVIRKLVPALKATGILMFWVMAVMVPASLFLGVLAGMREGSRT
DRTLSAASITTAATPEYISGVLFTVVFASWLGWLNGSAASATNQGISFYNFTLPVITMALYGTGYIARMTRASMAEVMTQ
QYIRTARLKGLSFGAVVVRHALRNALITPFTVIMLQFPWLLTGVAVVEVMFRYQGFGFTLVEAAANNDIDLLLACSLISV
FVVLSTQLVSDLGYALLNPRIRVQ

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=247, Percent_Identity=33.6032388663968, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789965, Length=269, Percent_Identity=31.5985130111524, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787497, Length=241, Percent_Identity=31.1203319502075, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789888, Length=346, Percent_Identity=26.878612716763, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1788504, Length=253, Percent_Identity=28.8537549407115, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=25.7462686567164, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787761, Length=263, Percent_Identity=28.8973384030418, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37880; Mature: 37749

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGFIIRRLGTMALAMLCLSLAVFYLVDLEPNLKRLAISQLNMRSSTEELESWLQRNGYR
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
QNFFVRYGQWLGVIPEQPRPDPATGKAMPRFSFCPEGGQAGYSGVLQGDFGCSTKFKVPV
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHH
IRKLVPALKATGILMFWVMAVMVPASLFLGVLAGMREGSRTDRTLSAASITTAATPEYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHH
GVLFTVVFASWLGWLNGSAASATNQGISFYNFTLPVITMALYGTGYIARMTRASMAEVMT
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
QQYIRTARLKGLSFGAVVVRHALRNALITPFTVIMLQFPWLLTGVAVVEVMFRYQGFGFT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LVEAAANNDIDLLLACSLISVFVVLSTQLVSDLGYALLNPRIRVQ
EEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure 
AGFIIRRLGTMALAMLCLSLAVFYLVDLEPNLKRLAISQLNMRSSTEELESWLQRNGYR
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
QNFFVRYGQWLGVIPEQPRPDPATGKAMPRFSFCPEGGQAGYSGVLQGDFGCSTKFKVPV
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHH
IRKLVPALKATGILMFWVMAVMVPASLFLGVLAGMREGSRTDRTLSAASITTAATPEYIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHH
GVLFTVVFASWLGWLNGSAASATNQGISFYNFTLPVITMALYGTGYIARMTRASMAEVMT
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
QQYIRTARLKGLSFGAVVVRHALRNALITPFTVIMLQFPWLLTGVAVVEVMFRYQGFGFT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LVEAAANNDIDLLLACSLISVFVVLSTQLVSDLGYALLNPRIRVQ
EEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]