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The map label for this gene is omp25 [H]

Identifier: 110634323

GI number: 110634323

Start: 2115057

End: 2115707

Strand: Reverse

Name: omp25 [H]

Synonym: Meso_1973

Alternate gene names: 110634323

Gene position: 2115707-2115057 (Counterclockwise)

Preceding gene: 110634329

Following gene: 110634319

Centisome position: 47.95

GC content: 64.21

Gene sequence:

>651_bases
ATGAAGGTCAACAAGAAATCAATGCTAGGCTTTGCAGCCGCCGCCGCGATCGTCGCCGGTGCGATGCCAGCATATGCTGC
GGACGTTATCATGGAGCAGCCGCCAGCACCGCCTGCCGCTCCGATGGAAGTGGCTCCGGTTGCTACCTGGGCCGGTCCCT
ATGCCGGTATCGCGCTTGGATACGGCTTCTCGGGTGAAGTGTCTGCGGACGGGGCTCCCGGCGAAGTGGAAACCGACGGC
TTCGTCGGCAACGTCTTCGGCGGCTGGCAAGGTCAGTCCGGCCAGTTCGTGTACGGTGTCGAAGGCGACATCGGATACAA
CGGCATGGAAGGGAGTGAAGGCGGCGTGGACGTCGAGCACGGCGTTGACGGCTCGCTGCGTGCCCGTCTTGGCTATGCGG
CCACTGACAATGTACTGCTCTATGCCACGGGCGGCGGCGCTGCCAGCCGGCTTGAGGCATCCGGCGGCGGCCTGACCGAA
TCGGAAACCGCGGTTGGCTGGACGGCCGGTGCGGGCGTGGACGTGAAGCTGACGCCGAAGTCCTTCGCGCGCCTCGAGTA
CCGCTACACCGATCTCAGCGCCGAGTTCGACAGCGTGGATGTCGACACGACGAGCAACAAGGTCATGCTCGGCGTCGGTA
TGCAGTTCTAA

Upstream 100 bases:

>100_bases
GAAAGCATTACAGGCGCACGGTTGGGGTTAAAAGGGCGAGTTGTCTGCTGCGACAAGCGTTCTTTCCCGAAATATTGCTC
ATGTGGCTAAGGAGATCACA

Downstream 100 bases:

>100_bases
AAAAAAGGCGGCAAACGCCAAACGAAGAAGCCGGGCACTGCCCGGCTTTTTCTTTTCATCTCCTTCGGGAGGGGATGAAA
CAGGCCTTATCGTGCCGGCG

Product: OmpA-like transmembrane region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKVNKKSMLGFAAAAAIVAGAMPAYAADVIMEQPPAPPAAPMEVAPVATWAGPYAGIALGYGFSGEVSADGAPGEVETDG
FVGNVFGGWQGQSGQFVYGVEGDIGYNGMEGSEGGVDVEHGVDGSLRARLGYAATDNVLLYATGGGAASRLEASGGGLTE
SETAVGWTAGAGVDVKLTPKSFARLEYRYTDLSAEFDSVDVDTTSNKVMLGVGMQF

Sequences:

>Translated_216_residues
MKVNKKSMLGFAAAAAIVAGAMPAYAADVIMEQPPAPPAAPMEVAPVATWAGPYAGIALGYGFSGEVSADGAPGEVETDG
FVGNVFGGWQGQSGQFVYGVEGDIGYNGMEGSEGGVDVEHGVDGSLRARLGYAATDNVLLYATGGGAASRLEASGGGLTE
SETAVGWTAGAGVDVKLTPKSFARLEYRYTDLSAEFDSVDVDTTSNKVMLGVGMQF
>Mature_216_residues
MKVNKKSMLGFAAAAAIVAGAMPAYAADVIMEQPPAPPAAPMEVAPVATWAGPYAGIALGYGFSGEVSADGAPGEVETDG
FVGNVFGGWQGQSGQFVYGVEGDIGYNGMEGSEGGVDVEHGVDGSLRARLGYAATDNVLLYATGGGAASRLEASGGGLTE
SETAVGWTAGAGVDVKLTPKSFARLEYRYTDLSAEFDSVDVDTTSNKVMLGVGMQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the omp25/ropB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR000498 [H]

Pfam domain/function: PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 21895; Mature: 21895

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNKKSMLGFAAAAAIVAGAMPAYAADVIMEQPPAPPAAPMEVAPVATWAGPYAGIALG
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEECEEEECCCCCCCEEEE
YGFSGEVSADGAPGEVETDGFVGNVFGGWQGQSGQFVYGVEGDIGYNGMEGSEGGVDVEH
CCCCCCCCCCCCCCCEECCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECC
GVDGSLRARLGYAATDNVLLYATGGGAASRLEASGGGLTESETAVGWTAGAGVDVKLTPK
CCCCCEEEEECEEECCCEEEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEECCH
SFARLEYRYTDLSAEFDSVDVDTTSNKVMLGVGMQF
HHEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCC
>Mature Secondary Structure
MKVNKKSMLGFAAAAAIVAGAMPAYAADVIMEQPPAPPAAPMEVAPVATWAGPYAGIALG
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEECEEEECCCCCCCEEEE
YGFSGEVSADGAPGEVETDGFVGNVFGGWQGQSGQFVYGVEGDIGYNGMEGSEGGVDVEH
CCCCCCCCCCCCCCCEECCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECC
GVDGSLRARLGYAATDNVLLYATGGGAASRLEASGGGLTESETAVGWTAGAGVDVKLTPK
CCCCCEEEEECEEECCCEEEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEECCH
SFARLEYRYTDLSAEFDSVDVDTTSNKVMLGVGMQF
HHEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896724 [H]