Click here to switch to the map view.

The map label for this gene is perM [C]

Identifier: 110634314

GI number: 110634314

Start: 2105109

End: 2106245

Strand: Reverse

Name: perM [C]

Synonym: Meso_1964

Alternate gene names: 110634314

Gene position: 2106245-2105109 (Counterclockwise)

Preceding gene: 110634315

Following gene: 110634313

Centisome position: 47.73

GC content: 59.01

Gene sequence:

>1137_bases
ATGTCGATACCGGCACCTCGGGACAGTGAGGCGGCGCCGCGCCGGGCGCTCGTTCGGCACGTCAGCTTTTGGCTCATCGC
CGCCGCGATCCTGATTCTCTTTCTTTATGTGTTCAGTTCCATCCTGCTGCCTTTCCTGGCGGGAATGGTGCTTGCATATT
TCCTCGATCCGATCGCTGACCGGCTGGAGCGCGTCGGCCTCTCGCGTTTGGCCGCCACGGTTCTCATACTCTGCGCGTTC
ATTATCCTGCTGGTGATCGCGTTGATGGTGATCATCCCGGTTCTCGGAAACCAGCTTACGGATTTCACGATGCGCCTGCC
GGATTACCTCACCCGGCTTCAGGCGCTCATCACAAATATCGATCCGGGATGGTTCGAGGAGAGGATCGGCGTCAATCCCC
AATCGCTGCGGGAAGGGTTGAGCACGCTCCTCACGCAGGGCGCCGGTTTCGTGGCCACGCTGTTCAAATCCATCTGGAGT
TCAGGCGTGGCGCTCGTCAATCTGGTGAGCCTTTTTGTCGTCACGCCCGTGGTGGCCTTCTACATGCTGCTCGATTGGGA
CCATATGGTCTCCAAGGTCGATAGCTGGGTGCCGCGCAAGCAGGTGGAAACGGTCCGCCAGATCGCGCGCGATATCAATA
CCGCCACCGCCGGTTTCGTACGGGGGCAGGGGACCATCTGCCTCATTCTCGGCTGCTTCTATGCCGTCGGGCTGACGCTG
GTAGGCCTCAATTTTGGTCTTCTCATCGGTTTCTTCGCGGGCCTGATAAGCTTCATCCCTTTTGTAGGTTCGCTCGTGGG
GCTCGCGCTTTCCATAGGAGTAGCCCTCGTTCAGTTCTGGCCGGAATGGTATTGGGTGCTGGCGGTAGCGGTCATCTTCT
TTGCGGGACAGTTCGTTGAAGGAAATATTCTCCAGCCCAAGCTCGTGGGCCGGAGCGTCGGCCTGCACCCGGTTTGGCTG
ATGTTTGCTCTTTACGCCTTCGGTTTTCTCTTCGGCTTTGTCGGCCTGCTGATTGCCGTGCCGGCATCCGCGGCGATCGC
CGTTCTCGTCCGCTTTGCAATTTCCCGCTATCTCGCTTCGCCATTATACGGTGGCCATCCGTCTCTTCCGGCCGAGCAGA
AAGGCCGTGATCTTTGA

Upstream 100 bases:

>100_bases
CTCGGGCTCCTCTATCCCGGTCTCGTCTATTTTTCCGGGCTCTTGACCGTGGCCTCAGGCGCGGCCTATCTCGTGAACTG
GATCAAGCATATGGGCGGTC

Downstream 100 bases:

>100_bases
TGGCAAGAGGCCTGTCGCCGCGGCAATTGCCACTCGATCTCGCCCATACCGAGGGCCGGTCGCGCGAAGACCTCGTGGTC
ACGCCCGCCAACGAGCTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSIPAPRDSEAAPRRALVRHVSFWLIAAAILILFLYVFSSILLPFLAGMVLAYFLDPIADRLERVGLSRLAATVLILCAF
IILLVIALMVIIPVLGNQLTDFTMRLPDYLTRLQALITNIDPGWFEERIGVNPQSLREGLSTLLTQGAGFVATLFKSIWS
SGVALVNLVSLFVVTPVVAFYMLLDWDHMVSKVDSWVPRKQVETVRQIARDINTATAGFVRGQGTICLILGCFYAVGLTL
VGLNFGLLIGFFAGLISFIPFVGSLVGLALSIGVALVQFWPEWYWVLAVAVIFFAGQFVEGNILQPKLVGRSVGLHPVWL
MFALYAFGFLFGFVGLLIAVPASAAIAVLVRFAISRYLASPLYGGHPSLPAEQKGRDL

Sequences:

>Translated_378_residues
MSIPAPRDSEAAPRRALVRHVSFWLIAAAILILFLYVFSSILLPFLAGMVLAYFLDPIADRLERVGLSRLAATVLILCAF
IILLVIALMVIIPVLGNQLTDFTMRLPDYLTRLQALITNIDPGWFEERIGVNPQSLREGLSTLLTQGAGFVATLFKSIWS
SGVALVNLVSLFVVTPVVAFYMLLDWDHMVSKVDSWVPRKQVETVRQIARDINTATAGFVRGQGTICLILGCFYAVGLTL
VGLNFGLLIGFFAGLISFIPFVGSLVGLALSIGVALVQFWPEWYWVLAVAVIFFAGQFVEGNILQPKLVGRSVGLHPVWL
MFALYAFGFLFGFVGLLIAVPASAAIAVLVRFAISRYLASPLYGGHPSLPAEQKGRDL
>Mature_377_residues
SIPAPRDSEAAPRRALVRHVSFWLIAAAILILFLYVFSSILLPFLAGMVLAYFLDPIADRLERVGLSRLAATVLILCAFI
ILLVIALMVIIPVLGNQLTDFTMRLPDYLTRLQALITNIDPGWFEERIGVNPQSLREGLSTLLTQGAGFVATLFKSIWSS
GVALVNLVSLFVVTPVVAFYMLLDWDHMVSKVDSWVPRKQVETVRQIARDINTATAGFVRGQGTICLILGCFYAVGLTLV
GLNFGLLIGFFAGLISFIPFVGSLVGLALSIGVALVQFWPEWYWVLAVAVIFFAGQFVEGNILQPKLVGRSVGLHPVWLM
FALYAFGFLFGFVGLLIAVPASAAIAVLVRFAISRYLASPLYGGHPSLPAEQKGRDL

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=333, Percent_Identity=29.4294294294294, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787885, Length=318, Percent_Identity=23.8993710691824, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082271, Length=329, Percent_Identity=20.9726443768997, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 41305; Mature: 41174

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIPAPRDSEAAPRRALVRHVSFWLIAAAILILFLYVFSSILLPFLAGMVLAYFLDPIAD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLERVGLSRLAATVLILCAFIILLVIALMVIIPVLGNQLTDFTMRLPDYLTRLQALITNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
DPGWFEERIGVNPQSLREGLSTLLTQGAGFVATLFKSIWSSGVALVNLVSLFVVTPVVAF
CCCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YMLLDWDHMVSKVDSWVPRKQVETVRQIARDINTATAGFVRGQGTICLILGCFYAVGLTL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VGLNFGLLIGFFAGLISFIPFVGSLVGLALSIGVALVQFWPEWYWVLAVAVIFFAGQFVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNILQPKLVGRSVGLHPVWLMFALYAFGFLFGFVGLLIAVPASAAIAVLVRFAISRYLAS
CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PLYGGHPSLPAEQKGRDL
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]