BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

Click here to switch to the map view.

The map label for this gene is yxjF [H]

Identifier: 110634310

GI number: 110634310

Start: 2101634

End: 2102386

Strand: Direct

Name: yxjF [H]

Synonym: Meso_1960

Alternate gene names: 110634310

Gene position: 2101634-2102386 (Clockwise)

Preceding gene: 110634308

Following gene: 110634316

Centisome position: 47.63

GC content: 61.35

Gene sequence:

>753_bases
ATGAGTGAAGCACGCATTGCACTTGTTACGGGCGCAGGCTCGGGTATTGGCGCGGTCACCGCCGCAGCGCTCGTGAAAAA
CGGATGGATGGTGGTGACCACCGGGCGGCGCCGGGAGATGCTGGAAAGCGCCGCTGCCTCGACCTGCGACCCATCCCGCG
TGGTCGCCCTCCCCTGTGACATTTCAAAGGCCAACGAGGTGGAGGCGCTATTCGGCAATATCGAGGAACGCTTCGGAAGG
CTCGACCTGCTTTTCAACAATGCTGGAATGGGATCCAAGGGCGCCCCCATCGACGAGATACCGGTCGAGACCTGGTTCGA
AGTGCTCGGCGTCAACCTCACCGGATCTTTCCTCTGCGCGCGCGCCGCATTCGGATTGATGCGTCGGCAACGCCCGATGG
GCGGACGCATCATCAACAACGGCTCGATCTCGGCCCACGCGCCGCGGCCGGGCTCGGTGCCCTATACGACCACGAAGCAT
GCGATCACTGGTCTGACCAAGACCTTGGCGCTAGACGGACGTCCTTTCGACATCGCCTGCGGTCAGATCGACATCGGCAA
TGCGCTGACCGATATGGCGATGCCAATGGCCAAAGGCATTCCGCAGGCCAATGGAGAGATGGCCGTCGAGGCCACGATGG
ATCCGAAGCATGTCGCCGATGCCGTGCTTCACATGGCCAATCTGCCTCTCGAAACCAACATATTGTTCATGACGGTTATG
GCGACGAAGATGCCGTTTGTCGGGCGCGGCTGA

Upstream 100 bases:

>100_bases
CTAGGCCGATGCCAGCCGGGCTGCCACGGGGGTTGGAACGCCTGGGCTTGCCTCCCGTCCCGATCTGCATAACTCTGGAC
TTTCTGAAAAGGGGCGTTTC

Downstream 100 bases:

>100_bases
TGGCGCGGCGATGAGCAGGAGCTGCTTGAGCTTCGCTCCGCAGAAATAACGCTAGTCCTTTACGGCCCCGGCAACCAGCC
TGGCAATCGCGGGACCGAAC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSEARIALVTGAGSGIGAVTAAALVKNGWMVVTTGRRREMLESAAASTCDPSRVVALPCDISKANEVEALFGNIEERFGR
LDLLFNNAGMGSKGAPIDEIPVETWFEVLGVNLTGSFLCARAAFGLMRRQRPMGGRIINNGSISAHAPRPGSVPYTTTKH
AITGLTKTLALDGRPFDIACGQIDIGNALTDMAMPMAKGIPQANGEMAVEATMDPKHVADAVLHMANLPLETNILFMTVM
ATKMPFVGRG

Sequences:

>Translated_250_residues
MSEARIALVTGAGSGIGAVTAAALVKNGWMVVTTGRRREMLESAAASTCDPSRVVALPCDISKANEVEALFGNIEERFGR
LDLLFNNAGMGSKGAPIDEIPVETWFEVLGVNLTGSFLCARAAFGLMRRQRPMGGRIINNGSISAHAPRPGSVPYTTTKH
AITGLTKTLALDGRPFDIACGQIDIGNALTDMAMPMAKGIPQANGEMAVEATMDPKHVADAVLHMANLPLETNILFMTVM
ATKMPFVGRG
>Mature_249_residues
SEARIALVTGAGSGIGAVTAAALVKNGWMVVTTGRRREMLESAAASTCDPSRVVALPCDISKANEVEALFGNIEERFGRL
DLLFNNAGMGSKGAPIDEIPVETWFEVLGVNLTGSFLCARAAFGLMRRQRPMGGRIINNGSISAHAPRPGSVPYTTTKHA
ITGLTKTLALDGRPFDIACGQIDIGNALTDMAMPMAKGIPQANGEMAVEATMDPKHVADAVLHMANLPLETNILFMTVMA
TKMPFVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=238, Percent_Identity=31.0924369747899, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI32483357, Length=175, Percent_Identity=31.4285714285714, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI4504505, Length=240, Percent_Identity=30, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI59889578, Length=143, Percent_Identity=31.4685314685315, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI19923817, Length=189, Percent_Identity=31.2169312169312, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI31542939, Length=171, Percent_Identity=29.8245614035088, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503817, Length=177, Percent_Identity=29.3785310734463, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=28.804347826087, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254992, Length=195, Percent_Identity=28.7179487179487, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=31.0526315789474, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=31.0526315789474, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI209862901, Length=196, Percent_Identity=30.1020408163265, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI19923983, Length=196, Percent_Identity=30.1020408163265, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI223718074, Length=259, Percent_Identity=27.4131274131274, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7706318, Length=165, Percent_Identity=27.8787878787879, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4758504, Length=182, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1788459, Length=171, Percent_Identity=33.9181286549708, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790717, Length=192, Percent_Identity=28.6458333333333, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787820, Length=249, Percent_Identity=26.9076305220884, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789057, Length=222, Percent_Identity=29.2792792792793, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI2367175, Length=173, Percent_Identity=34.6820809248555, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=32.6086956521739, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787335, Length=197, Percent_Identity=28.4263959390863, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082160, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082100, Length=216, Percent_Identity=30.0925925925926, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789208, Length=168, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=27.3076923076923, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=207, Percent_Identity=27.0531400966184, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=191, Percent_Identity=27.2251308900524, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=175, Percent_Identity=29.1428571428571, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=238, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=233, Percent_Identity=29.1845493562232, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=24.2424242424242, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=184, Percent_Identity=28.2608695652174, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=179, Percent_Identity=29.608938547486, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=27.8350515463918, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=197, Percent_Identity=28.4263959390863, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=25, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=176, Percent_Identity=28.9772727272727, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=272, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=183, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=194, Percent_Identity=30.4123711340206, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=30.2083333333333, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=172, Percent_Identity=29.0697674418605, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007236, Length=252, Percent_Identity=32.5396825396825, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=37.2222222222222, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI28571387, Length=253, Percent_Identity=30.0395256916996, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI116007234, Length=252, Percent_Identity=30.1587301587302, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648944, Length=236, Percent_Identity=28.8135593220339, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=29.7872340425532, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI281364494, Length=249, Percent_Identity=28.1124497991968, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641388, Length=172, Percent_Identity=35.4651162790698, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24648693, Length=176, Percent_Identity=32.9545454545455, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21355889, Length=176, Percent_Identity=32.9545454545455, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007232, Length=182, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21355319, Length=172, Percent_Identity=29.6511627906977, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24641232, Length=174, Percent_Identity=32.7586206896552, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=177, Percent_Identity=31.0734463276836, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=28.4210526315789, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639444, Length=231, Percent_Identity=28.1385281385281, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI17737361, Length=181, Percent_Identity=29.8342541436464, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580925, Length=182, Percent_Identity=27.4725274725275, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=32.2916666666667, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24663911, Length=244, Percent_Identity=25.8196721311475, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357041, Length=196, Percent_Identity=28.0612244897959, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643142, Length=188, Percent_Identity=30.3191489361702, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356301, Length=181, Percent_Identity=28.1767955801105, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26371; Mature: 26240

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEARIALVTGAGSGIGAVTAAALVKNGWMVVTTGRRREMLESAAASTCDPSRVVALPCD
CCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCEEEEECC
ISKANEVEALFGNIEERFGRLDLLFNNAGMGSKGAPIDEIPVETWFEVLGVNLTGSFLCA
CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH
RAAFGLMRRQRPMGGRIINNGSISAHAPRPGSVPYTTTKHAITGLTKTLALDGRPFDIAC
HHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCEEEEE
GQIDIGNALTDMAMPMAKGIPQANGEMAVEATMDPKHVADAVLHMANLPLETNILFMTVM
CEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEH
ATKMPFVGRG
HHCCCCCCCC
>Mature Secondary Structure 
SEARIALVTGAGSGIGAVTAAALVKNGWMVVTTGRRREMLESAAASTCDPSRVVALPCD
CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCEEEEECC
ISKANEVEALFGNIEERFGRLDLLFNNAGMGSKGAPIDEIPVETWFEVLGVNLTGSFLCA
CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH
RAAFGLMRRQRPMGGRIINNGSISAHAPRPGSVPYTTTKHAITGLTKTLALDGRPFDIAC
HHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCEEEEE
GQIDIGNALTDMAMPMAKGIPQANGEMAVEATMDPKHVADAVLHMANLPLETNILFMTVM
CEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEH
ATKMPFVGRG
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]