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The map label for this gene is yoaB [C]

Identifier: 110634280

GI number: 110634280

Start: 2066726

End: 2067097

Strand: Reverse

Name: yoaB [C]

Synonym: Meso_1930

Alternate gene names: 110634280

Gene position: 2067097-2066726 (Counterclockwise)

Preceding gene: 110634281

Following gene: 110634279

Centisome position: 46.85

GC content: 51.08

Gene sequence:

>372_bases
ATGAAAAGTATCAGGAAAGGAAATACGTTGATCAATAGACGATACAGAACGCCCATTATGCATCGTGCCGTAATCAGCTC
GGACGTTATCTATTTCGGCGGCGTCGTCGCGGACGATGTGTCAGACGGCATGTTCTCGCAGATGGAACAGGTATGTAAAA
AGATCGAACGCATGTTAGGCGAGTTGGGTTCGAGCAAGGAGAAACTGCTCCAGGCTACTCTCTATATCACCGACATGTCG
CTTAAAAACGAAATGAATGATGCATGGACGGGATGGCTCAGTCCGGAGAATCTGCCGAGTCGCGCAACCATCGGTGTTGC
CGATCTGGGAGAAGGCGTGCTCGTAGAAGCGGTCGTGACAGCCCGCCAATGA

Upstream 100 bases:

>100_bases
ATGTTGGCGCCTATCGTATCCGGCCACCTGTCAAGCCCATCACTGTTGGGCAGATAGCCAATTTGCAAACGAGGCACAAA
CGCGGCCTTGAGTGTCTCCA

Downstream 100 bases:

>100_bases
GGTTGAACGAGGTAAACTGTGTCTGACGCGGTGAATAGTTCACAACCTAGTGCAAAGACGCCTGTCACCGCGCGGGATGT
CGCCCGCAACGCGGGTGTCT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKSIRKGNTLINRRYRTPIMHRAVISSDVIYFGGVVADDVSDGMFSQMEQVCKKIERMLGELGSSKEKLLQATLYITDMS
LKNEMNDAWTGWLSPENLPSRATIGVADLGEGVLVEAVVTARQ

Sequences:

>Translated_123_residues
MKSIRKGNTLINRRYRTPIMHRAVISSDVIYFGGVVADDVSDGMFSQMEQVCKKIERMLGELGSSKEKLLQATLYITDMS
LKNEMNDAWTGWLSPENLPSRATIGVADLGEGVLVEAVVTARQ
>Mature_123_residues
MKSIRKGNTLINRRYRTPIMHRAVISSDVIYFGGVVADDVSDGMFSQMEQVCKKIERMLGELGSSKEKLLQATLYITDMS
LKNEMNDAWTGWLSPENLPSRATIGVADLGEGVLVEAVVTARQ

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13651; Mature: 13651

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIRKGNTLINRRYRTPIMHRAVISSDVIYFGGVVADDVSDGMFSQMEQVCKKIERMLG
CCCCCCCCHHHHHHHCCHHHHHHHHHCCHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHH
ELGSSKEKLLQATLYITDMSLKNEMNDAWTGWLSPENLPSRATIGVADLGEGVLVEAVVT
HHCCHHHHHHHHHHHHCCHHHHHHCCHHHCCCCCCCCCCCCCEECHHHCCCCHHHHHHHH
ARQ
CCC
>Mature Secondary Structure
MKSIRKGNTLINRRYRTPIMHRAVISSDVIYFGGVVADDVSDGMFSQMEQVCKKIERMLG
CCCCCCCCHHHHHHHCCHHHHHHHHHCCHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHH
ELGSSKEKLLQATLYITDMSLKNEMNDAWTGWLSPENLPSRATIGVADLGEGVLVEAVVT
HHCCHHHHHHHHHHHHCCHHHHHHCCHHHCCCCCCCCCCCCCEECHHHCCCCHHHHHHHH
ARQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA