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The map label for this gene is yliC [C]

Identifier: 110634184

GI number: 110634184

Start: 1969597

End: 1970577

Strand: Reverse

Name: yliC [C]

Synonym: Meso_1834

Alternate gene names: 110634184

Gene position: 1970577-1969597 (Counterclockwise)

Preceding gene: 110634185

Following gene: 110634183

Centisome position: 44.66

GC content: 61.06

Gene sequence:

>981_bases
TTGCTAGCCTATCTGGTCAGGCGACTGCTTGTCATGATCCCGATGATGCTGATCGCCAGCTTTCTCATGTTCGTCGTCAT
CAGCTTCTCCGGCGATCCGCTCGCGGGATTGAAGACCATGCAGCCGCCTCCGCCGCCCGAGGTGCTGCACGCCATGGCGG
TCAAGTTGAGGCTCGATCAGCCACTTCTCGACCGATACTGGATGTGGCTCTCCGGCCTGTTCGTCGGGGATTTCGGGCCG
AGCATTCACAATATCGATATCGGTGCGGAGCTCGTGAAGCGCCTTGGTGTTTCGCTGCGGCTCCTGGCGCTCGGCATCGT
GCTCGCATTCTTGATGGCTGTCGCGGCGTCGGTTATCGGCGCAGTGCTGCAGTTTTCCTGGGCCGACCATATTATCAGCT
TCGTCGCCGTCGCGATGATATCGATGCCGGTGTTCTGGCTTGCGCTGCAGCTCAAGCGGCTGGCGATCAGCATCAATCAG
GAGCTTGGGTTCAGGCTGCTCTATACGTCCGGGGATGGCGCGGGCATGACGGCGAGCACACCGTGGGATCGGGTGCTGCT
TCTCATCGGTGTGCTGGCGCTCCCCACGATCGCGCTTTCCATGCAGGCTTGCGGGAAATGGAGCCGCTACGGCCGTGTGG
CCCTAATCGACGCGTTAAACAGCGAATATGTGAAGCTTGCCAGGGCCAAGGGCCTTTCGGAGACGCGCGTGGTGCTGGCG
CACGGCCTGCGAACCTCGCTTGCGCCTATGCTTACCGTTGTGGCTGCGGGCGGCGCCGTCATTCTCGGCGAGTCCGTCGT
CACCGAGACGGTCTTCCAATGGCGCGGGATGGGAGACCTCCTCGTCACCGGAATCCAGAACAACGACGTCTATGTCGTTC
TCGGCTGGCTGCTGGTGGCCGGTCTCATCATCATGGTCTTCAATCTGATTGCGGATATCCTCTATGCCGTCCTCGACCCC
CGCATCCGCTATGAGCGATAG

Upstream 100 bases:

>100_bases
GCGGAGTGAATGGGCGGAAGGGGCCGGGCAGCTTCCGGCATGACGGCCCCTTCACCCAAATCGTTCCGCCGATGATTTTC
CAAGCTGCAGGGAGTTGAGC

Downstream 100 bases:

>100_bases
AGCAGTGGAAATAGGACAGGCGCCTGCGCAGGAGCAGGTCTACCGTCCCTGGCGTGCCATTGCGCGCAAGTTCTTTAGCT
ACAAGGCATCAGTCGTCTCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MLAYLVRRLLVMIPMMLIASFLMFVVISFSGDPLAGLKTMQPPPPPEVLHAMAVKLRLDQPLLDRYWMWLSGLFVGDFGP
SIHNIDIGAELVKRLGVSLRLLALGIVLAFLMAVAASVIGAVLQFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQ
ELGFRLLYTSGDGAGMTASTPWDRVLLLIGVLALPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGLSETRVVLA
HGLRTSLAPMLTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYVVLGWLLVAGLIIMVFNLIADILYAVLDP
RIRYER

Sequences:

>Translated_326_residues
MLAYLVRRLLVMIPMMLIASFLMFVVISFSGDPLAGLKTMQPPPPPEVLHAMAVKLRLDQPLLDRYWMWLSGLFVGDFGP
SIHNIDIGAELVKRLGVSLRLLALGIVLAFLMAVAASVIGAVLQFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQ
ELGFRLLYTSGDGAGMTASTPWDRVLLLIGVLALPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGLSETRVVLA
HGLRTSLAPMLTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYVVLGWLLVAGLIIMVFNLIADILYAVLDP
RIRYER
>Mature_326_residues
MLAYLVRRLLVMIPMMLIASFLMFVVISFSGDPLAGLKTMQPPPPPEVLHAMAVKLRLDQPLLDRYWMWLSGLFVGDFGP
SIHNIDIGAELVKRLGVSLRLLALGIVLAFLMAVAASVIGAVLQFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQ
ELGFRLLYTSGDGAGMTASTPWDRVLLLIGVLALPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGLSETRVVLA
HGLRTSLAPMLTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYVVLGWLLVAGLIIMVFNLIADILYAVLDP
RIRYER

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yliabcd; Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=330, Percent_Identity=33.9393939393939, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787497, Length=327, Percent_Identity=32.1100917431193, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1789965, Length=348, Percent_Identity=29.5977011494253, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1789888, Length=329, Percent_Identity=31.306990881459, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=27.7372262773723, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=31.3291139240506, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788504, Length=286, Percent_Identity=26.2237762237762, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35600; Mature: 35600

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYLVRRLLVMIPMMLIASFLMFVVISFSGDPLAGLKTMQPPPPPEVLHAMAVKLRLDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
PLLDRYWMWLSGLFVGDFGPSIHNIDIGAELVKRLGVSLRLLALGIVLAFLMAVAASVIG
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
AVLQFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQELGFRLLYTSGDGAGMTAST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
PWDRVLLLIGVLALPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGLSETRVVLA
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHH
HGLRTSLAPMLTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYVVLGWLLVA
HHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCCCHHEEEECCCCCEEEHHHHHHHH
GLIIMVFNLIADILYAVLDPRIRYER
HHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLAYLVRRLLVMIPMMLIASFLMFVVISFSGDPLAGLKTMQPPPPPEVLHAMAVKLRLDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
PLLDRYWMWLSGLFVGDFGPSIHNIDIGAELVKRLGVSLRLLALGIVLAFLMAVAASVIG
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
AVLQFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQELGFRLLYTSGDGAGMTAST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
PWDRVLLLIGVLALPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGLSETRVVLA
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHH
HGLRTSLAPMLTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYVVLGWLLVA
HHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCCCHHEEEECCCCCEEEHHHHHHHH
GLIIMVFNLIADILYAVLDPRIRYER
HHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]