Click here to switch to the map view.

The map label for this gene is oppC [C]

Identifier: 110634183

GI number: 110634183

Start: 1968708

End: 1969607

Strand: Reverse

Name: oppC [C]

Synonym: Meso_1833

Alternate gene names: 110634183

Gene position: 1969607-1968708 (Counterclockwise)

Preceding gene: 110634184

Following gene: 110634182

Centisome position: 44.64

GC content: 64.78

Gene sequence:

>900_bases
ATGAGCGATAGAGCAGTGGAAATAGGACAGGCGCCTGCGCAGGAGCAGGTCTACCGTCCCTGGCGTGCCATTGCGCGCAA
GTTCTTTAGCTACAAGGCATCAGTCGTCTCGCTCGTCATCCTGATCCTGATCGTGCTCTTCGCCTTCGCCGGCGGGCCCT
TGTGGAAATATTCCTATGCCGTATCGACGTCCGACCTGTCGGCGCCGCCGAGCTGGGAGCATCCCTTCGGGACCGATCAT
CTGGGCTACGATCTCATGGCGGGCGTGATGCGGGGCACGCAGCGCTCGCTCTCCATCGCTGGAACGGTGGCGGTGCTCGC
CACGCTGATCGGCTCGATCTGGGGTGCGGTCGCCGGCTATGTCGGCGGCTGGGCGGACTCGCTCCTGATGCGGATCGTCG
ATCTCATCATGATTTTCCCACTCCTGGCGGTCGCCGCCTTCCTCGCCCGGCAGTCTCAGGGCGGGGAGCACGGCTGGCTG
CTGGTGGCGCTCGTGCTGGCGACCCTCTCATGGACGGTGCTGGCGCGTGTCGTGCGCTCGGTAGTGCTCTCGCTTAGAAC
GCGCGAATTCGTCATCGCGGCGAAGATCGCCGGAGCGGGGCCGGTGCGCATCATCTTCCGCCACCTGCTTCCGAACACGG
TGGGGCCGATCATCGTCGCGGCCACGGTGCTGGTGGCGAGCGCCATATTGTCGGAGACCGCTCTTTCCTACCTCGGCTTC
GGCGTGCAGCCTCCGGACACCTCGCTCGGGCTCCTGATCAACCAGGCCCAAGGTGCGATTTCTACCCGCCCCTGGCTCTT
CTACTTCCCGGGGCTCTTCATCATCCTGATCGCGCTCTGCGTGGCCTTCATCGGAGACGGCTTGCGGGCCGCCCTCGATC
CCAAGCAGCAGAGGAAATGA

Upstream 100 bases:

>100_bases
TATGTCGTTCTCGGCTGGCTGCTGGTGGCCGGTCTCATCATCATGGTCTTCAATCTGATTGCGGATATCCTCTATGCCGT
CCTCGACCCCCGCATCCGCT

Downstream 100 bases:

>100_bases
GGCCCCATATGAGCGAGAGCGTCCATATCGCGGGCGGCACCGGCGCGCCGCTGGTCAGCGTCTCCGGCCTTACCGTCAGC
TTCGACCGGCACAGGGAAGA

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSDRAVEIGQAPAQEQVYRPWRAIARKFFSYKASVVSLVILILIVLFAFAGGPLWKYSYAVSTSDLSAPPSWEHPFGTDH
LGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGYVGGWADSLLMRIVDLIMIFPLLAVAAFLARQSQGGEHGWL
LVALVLATLSWTVLARVVRSVVLSLRTREFVIAAKIAGAGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSYLGF
GVQPPDTSLGLLINQAQGAISTRPWLFYFPGLFIILIALCVAFIGDGLRAALDPKQQRK

Sequences:

>Translated_299_residues
MSDRAVEIGQAPAQEQVYRPWRAIARKFFSYKASVVSLVILILIVLFAFAGGPLWKYSYAVSTSDLSAPPSWEHPFGTDH
LGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGYVGGWADSLLMRIVDLIMIFPLLAVAAFLARQSQGGEHGWL
LVALVLATLSWTVLARVVRSVVLSLRTREFVIAAKIAGAGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSYLGF
GVQPPDTSLGLLINQAQGAISTRPWLFYFPGLFIILIALCVAFIGDGLRAALDPKQQRK
>Mature_298_residues
SDRAVEIGQAPAQEQVYRPWRAIARKFFSYKASVVSLVILILIVLFAFAGGPLWKYSYAVSTSDLSAPPSWEHPFGTDHL
GYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGYVGGWADSLLMRIVDLIMIFPLLAVAAFLARQSQGGEHGWLL
VALVLATLSWTVLARVVRSVVLSLRTREFVIAAKIAGAGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSYLGFG
VQPPDTSLGLLINQAQGAISTRPWLFYFPGLFIILIALCVAFIGDGLRAALDPKQQRK

Specific function: Part Of The Binding-Protein-Dependent Transport System For Oligopeptides; Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=280, Percent_Identity=37.1428571428571, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1787054, Length=287, Percent_Identity=37.6306620209059, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789964, Length=249, Percent_Identity=36.9477911646586, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=34.4262295081967, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787760, Length=269, Percent_Identity=33.8289962825279, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788505, Length=235, Percent_Identity=30.2127659574468, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787549, Length=284, Percent_Identity=29.5774647887324, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32113; Mature: 31982

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRAVEIGQAPAQEQVYRPWRAIARKFFSYKASVVSLVILILIVLFAFAGGPLWKYSYA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
VSTSDLSAPPSWEHPFGTDHLGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGY
ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGWADSLLMRIVDLIMIFPLLAVAAFLARQSQGGEHGWLLVALVLATLSWTVLARVVRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VVLSLRTREFVIAAKIAGAGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSYLGF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GVQPPDTSLGLLINQAQGAISTRPWLFYFPGLFIILIALCVAFIGDGLRAALDPKQQRK
CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHCCC
>Mature Secondary Structure 
SDRAVEIGQAPAQEQVYRPWRAIARKFFSYKASVVSLVILILIVLFAFAGGPLWKYSYA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
VSTSDLSAPPSWEHPFGTDHLGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGY
ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGWADSLLMRIVDLIMIFPLLAVAAFLARQSQGGEHGWLLVALVLATLSWTVLARVVRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VVLSLRTREFVIAAKIAGAGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSYLGF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GVQPPDTSLGLLINQAQGAISTRPWLFYFPGLFIILIALCVAFIGDGLRAALDPKQQRK
CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]