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The map label for this gene is ygaF [H]

Identifier: 110634138

GI number: 110634138

Start: 1911366

End: 1911842

Strand: Direct

Name: ygaF [H]

Synonym: Meso_1787

Alternate gene names: 110634138

Gene position: 1911366-1911842 (Clockwise)

Preceding gene: 110634136

Following gene: 110634139

Centisome position: 43.32

GC content: 57.23

Gene sequence:

>477_bases
ATGGCCATCGTCGAAAAAGGAGACATAGCTCCCGATTTTGAGCTGCCGCAGGATGGCGGCCGCACGTTTCGGTTGTCGAG
TTTGCGCGGAAAACCGGTGGTTCTCTATTTCTATCCCAAGGACGACACTTCGGGATGCACGGCGCAGGCCATCGAATTCT
CGGCCCGGAAGGACGAATTCGAAGCGCTGGGTATTTCCATCGTCGGGCTTTCTCCCGATACCGTGAAGAGCCACGACAAG
TTCAAGGCCAAGCACGATATCTCCATCAGCCTTGTCGCTGACCCGGAGAAAAAGGTGGTGCAGGATTATGGCGTGTGGGT
GGAGAAGAGCATGTATGGCCGCAAATATATGGGGGTGGAGCGCAGCACCTTCCTGCTCGATGCCGAGGGCCGCATTGCGG
AGCTGTGGCGCAAAGTTCAGCTCAAGGGGCATGTGGATGCGGTGCTGAAGGCGGCAAAAGCCCTCCGCGATTCATAG

Upstream 100 bases:

>100_bases
CCGCTTCAAACCATTATAGGCATGCTTGGCCCGGATGAGGTCAAGTTTCCGAGGCTGGAAGAATTCAATGCGGGCATAAT
CAGGGAAGAAGGGTAAGATC

Downstream 100 bases:

>100_bases
CGTCAGCAGGAGCCCCGCCTCCGCGCGGTAAGGATTTGTTAACCTTAATACTGTCTAGTCGGCGTTCTCGGCAAATCTGC
AGCAGGCAGTCGATCCGTGA

Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MAIVEKGDIAPDFELPQDGGRTFRLSSLRGKPVVLYFYPKDDTSGCTAQAIEFSARKDEFEALGISIVGLSPDTVKSHDK
FKAKHDISISLVADPEKKVVQDYGVWVEKSMYGRKYMGVERSTFLLDAEGRIAELWRKVQLKGHVDAVLKAAKALRDS

Sequences:

>Translated_158_residues
MAIVEKGDIAPDFELPQDGGRTFRLSSLRGKPVVLYFYPKDDTSGCTAQAIEFSARKDEFEALGISIVGLSPDTVKSHDK
FKAKHDISISLVADPEKKVVQDYGVWVEKSMYGRKYMGVERSTFLLDAEGRIAELWRKVQLKGHVDAVLKAAKALRDS
>Mature_157_residues
AIVEKGDIAPDFELPQDGGRTFRLSSLRGKPVVLYFYPKDDTSGCTAQAIEFSARKDEFEALGISIVGLSPDTVKSHDKF
KAKHDISISLVADPEKKVVQDYGVWVEKSMYGRKYMGVERSTFLLDAEGRIAELWRKVQLKGHVDAVLKAAKALRDS

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI4505591, Length=162, Percent_Identity=30.2469135802469, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI32455266, Length=162, Percent_Identity=30.2469135802469, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI32455264, Length=162, Percent_Identity=30.2469135802469, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI32189392, Length=161, Percent_Identity=31.6770186335404, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1788825, Length=153, Percent_Identity=36.6013071895425, Blast_Score=119, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21357347, Length=169, Percent_Identity=28.9940828402367, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17593; Mature: 17462

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVEKGDIAPDFELPQDGGRTFRLSSLRGKPVVLYFYPKDDTSGCTAQAIEFSARKDEF
CCEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCC
EALGISIVGLSPDTVKSHDKFKAKHDISISLVADPEKKVVQDYGVWVEKSMYGRKYMGVE
EEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCEEEHHHCCCEECCCC
RSTFLLDAEGRIAELWRKVQLKGHVDAVLKAAKALRDS
CCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIVEKGDIAPDFELPQDGGRTFRLSSLRGKPVVLYFYPKDDTSGCTAQAIEFSARKDEF
CEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCC
EALGISIVGLSPDTVKSHDKFKAKHDISISLVADPEKKVVQDYGVWVEKSMYGRKYMGVE
EEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCEEEHHHCCCEECCCC
RSTFLLDAEGRIAELWRKVQLKGHVDAVLKAAKALRDS
CCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]