| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is yheS [H]
Identifier: 110634105
GI number: 110634105
Start: 1872932
End: 1874809
Strand: Direct
Name: yheS [H]
Synonym: Meso_1754
Alternate gene names: 110634105
Gene position: 1872932-1874809 (Clockwise)
Preceding gene: 110634104
Following gene: 110634108
Centisome position: 42.45
GC content: 64.16
Gene sequence:
>1878_bases ATGCTGAACATCAATGATCTCTCGCTCCGCGTTGCAGGCCGGCTCCTCATCGAGCAGGCCTCCTTGACGCTGCCCGCCGG CACGAAAGCCGGCCTTGTCGGCCGAAACGGCACCGGCAAGACGACGCTTTTCCGCGCCATCACGGGCGAGCTTTCGCCGG AAACGGGCTCGATCAGCCTGCCGAAGGGCACGCGCATCGGCCAGGTGGCACAGGAGGCCCCCGGCACCGAGGAGCCGCTG ATCGACATAGTGCTCAAGGCCGATACCGAGCGCGACCGGCTGATGCGGGAGGCAGAGACGGCCGAGGACCCGCACCGCAT CGCCGAGATTCAAACCCGGCTTGCCGATATTGACGCCCATTCCGCGGAGGCACGCGCCGCGGCGATCCTAGCCGGCCTTG GCTTCGGTCCGGCAGCACAGAAGCGCCCAGCCTCCTCCTTTTCCGGCGGCTGGCGTATGCGTGTGGCGCTCGCGGCGGTG CTCTTCGCCGAGCCCGATCTCCTGCTTCTCGACGAGCCCACCAACTATCTCGACCTCGAAGGCACGCTCTGGCTGGAAGG CTACCTGGCGAAATATCCCTACACGGTGCTGCTCATCAGCCACGACCGCGACCTCCTGAACCATGCGGTCAACAACATCG TGCATCTGGAGGGGAAGAAGCTCACCTTCTGGCGCGGCGGTTATGACCAGTTCGCCCGGCAATATGCCGAAAAGGCCGAA TTGCAGGAAAAGATGCGCACCAAGCAGGAAGCGCAGAAGAAGCATATGGAAGCCTTTGTGGAGCGCTTCCGGGCCAAGGC GTCCAAAGCGCGGCAGGCGCAATCGCGCCTGAAAGCGTTGGAGCGGATGAAGCCCATCGCGGCCACGGTGAACGAGAATG TCAGGCCGTTCCGGTTCCCTAATCCGGTAAAGACAGTCGCCTCTCCCATCGTCGCGATCGATAGCGGCGCGGTGGGCTAT GAACCCGGCCGGCCAATCCTGAAGAACCTGACGCTGCGCATCGACAATGACGACCGCATCGCTCTTCTGGGGTCGAACGG CAACGGCAAGTCCACCTTTGCCAAGCTGATCGCCGGCAGGCTCAAGCTTGAAAGCGGAACGATGACGCTCGCGCCGGGCC TGAAGGTCTCGATTTTTGCGCAGCACCAGCTTGATGACCTGAGGCCGGAGGAGAACGCGCACCAGCATGTGCGCCGGCTT ATGCCGGATGCGCCCGAAGCGAAGGTGCGCGCGCGTGTGGCCCAGTTCGGCCTTTCGACGGAGAAGATGGATACGCCGGC CAAGGAGCTTTCGGGCGGCGAAAAGGCGCGGCTGCTCATGGGGCTTGCCTCCTTCGAGGCGCCTCACCTCTTCATCCTCG ACGAGCCGACCAACCACCTCGACATCGACAGCCGCGAGGCATTGGTGGAAGCGTTGAACGAGTTCGAGGGGGCTGTGATC CTCATCAGCCACGACCGGCACCTTATCGAGGCCTGCGCCGACCGGCTGTGGCTCGTGAACCACGGAACCGTGCAGCCTTA CGACGGCGACATGGAAGATTATCGCGCGCTGACGACCGGTGGAGGAAGCCGCAACCGCGAGCGGCGCGAAGCCGACAAGG CGTCGAAGGCCGACCGCCGGAGGGAAGCTGCGAAACGTCGCGCCGCACTCGAACCGCTCGCCAAGGAAATCAAGGCCACG GAAGGGCTGATCGAGCGTACACGCAAGCGCATCGAAGCAATCGAGGCCCAAATGGCCGATCCCGGCCTTTATGCCCGCGA CCCGGGAAAGATCTCCACGCTCGGCAAGGAGCGCGCGGACCTGGCGCAAGCGCTCGCGCGCCAGGAGGAGAAGTGGCTGG AGCTTTCGACGGAATATGAGGAAGGGGTGGCTGAGTAG
Upstream 100 bases:
>100_bases CCTGAATTGCGCCAAGGGATAGCCGGGCCGAGATCAGCGCTCCGGAAAATCGCTGAACGGGCTTGCAAGCGCAGGCGGCC TCGGCCAAAACCGCGCGGCT
Downstream 100 bases:
>100_bases ATTGGGCAGTAAGGAATTAAGCAGTAGGGCAGTAGGTTGAGACATCTCAACCGTAACTCGGAACGAGCTCTACTTCACCT GTTCTTGACCGCCGTGGCGC
Product: ABC transporter related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 625; Mature: 625
Protein sequence:
>625_residues MLNINDLSLRVAGRLLIEQASLTLPAGTKAGLVGRNGTGKTTLFRAITGELSPETGSISLPKGTRIGQVAQEAPGTEEPL IDIVLKADTERDRLMREAETAEDPHRIAEIQTRLADIDAHSAEARAAAILAGLGFGPAAQKRPASSFSGGWRMRVALAAV LFAEPDLLLLDEPTNYLDLEGTLWLEGYLAKYPYTVLLISHDRDLLNHAVNNIVHLEGKKLTFWRGGYDQFARQYAEKAE LQEKMRTKQEAQKKHMEAFVERFRAKASKARQAQSRLKALERMKPIAATVNENVRPFRFPNPVKTVASPIVAIDSGAVGY EPGRPILKNLTLRIDNDDRIALLGSNGNGKSTFAKLIAGRLKLESGTMTLAPGLKVSIFAQHQLDDLRPEENAHQHVRRL MPDAPEAKVRARVAQFGLSTEKMDTPAKELSGGEKARLLMGLASFEAPHLFILDEPTNHLDIDSREALVEALNEFEGAVI LISHDRHLIEACADRLWLVNHGTVQPYDGDMEDYRALTTGGGSRNRERREADKASKADRRREAAKRRAALEPLAKEIKAT EGLIERTRKRIEAIEAQMADPGLYARDPGKISTLGKERADLAQALARQEEKWLELSTEYEEGVAE
Sequences:
>Translated_625_residues MLNINDLSLRVAGRLLIEQASLTLPAGTKAGLVGRNGTGKTTLFRAITGELSPETGSISLPKGTRIGQVAQEAPGTEEPL IDIVLKADTERDRLMREAETAEDPHRIAEIQTRLADIDAHSAEARAAAILAGLGFGPAAQKRPASSFSGGWRMRVALAAV LFAEPDLLLLDEPTNYLDLEGTLWLEGYLAKYPYTVLLISHDRDLLNHAVNNIVHLEGKKLTFWRGGYDQFARQYAEKAE LQEKMRTKQEAQKKHMEAFVERFRAKASKARQAQSRLKALERMKPIAATVNENVRPFRFPNPVKTVASPIVAIDSGAVGY EPGRPILKNLTLRIDNDDRIALLGSNGNGKSTFAKLIAGRLKLESGTMTLAPGLKVSIFAQHQLDDLRPEENAHQHVRRL MPDAPEAKVRARVAQFGLSTEKMDTPAKELSGGEKARLLMGLASFEAPHLFILDEPTNHLDIDSREALVEALNEFEGAVI LISHDRHLIEACADRLWLVNHGTVQPYDGDMEDYRALTTGGGSRNRERREADKASKADRRREAAKRRAALEPLAKEIKAT EGLIERTRKRIEAIEAQMADPGLYARDPGKISTLGKERADLAQALARQEEKWLELSTEYEEGVAE >Mature_625_residues MLNINDLSLRVAGRLLIEQASLTLPAGTKAGLVGRNGTGKTTLFRAITGELSPETGSISLPKGTRIGQVAQEAPGTEEPL IDIVLKADTERDRLMREAETAEDPHRIAEIQTRLADIDAHSAEARAAAILAGLGFGPAAQKRPASSFSGGWRMRVALAAV LFAEPDLLLLDEPTNYLDLEGTLWLEGYLAKYPYTVLLISHDRDLLNHAVNNIVHLEGKKLTFWRGGYDQFARQYAEKAE LQEKMRTKQEAQKKHMEAFVERFRAKASKARQAQSRLKALERMKPIAATVNENVRPFRFPNPVKTVASPIVAIDSGAVGY EPGRPILKNLTLRIDNDDRIALLGSNGNGKSTFAKLIAGRLKLESGTMTLAPGLKVSIFAQHQLDDLRPEENAHQHVRRL MPDAPEAKVRARVAQFGLSTEKMDTPAKELSGGEKARLLMGLASFEAPHLFILDEPTNHLDIDSREALVEALNEFEGAVI LISHDRHLIEACADRLWLVNHGTVQPYDGDMEDYRALTTGGGSRNRERREADKASKADRRREAAKRRAALEPLAKEIKAT EGLIERTRKRIEAIEAQMADPGLYARDPGKISTLGKERADLAQALARQEEKWLELSTEYEEGVAE
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=528, Percent_Identity=38.4469696969697, Blast_Score=381, Evalue=1e-105, Organism=Homo sapiens, GI27881506, Length=528, Percent_Identity=38.0681818181818, Blast_Score=344, Evalue=1e-94, Organism=Homo sapiens, GI10947137, Length=528, Percent_Identity=38.0681818181818, Blast_Score=344, Evalue=2e-94, Organism=Homo sapiens, GI69354671, Length=539, Percent_Identity=36.734693877551, Blast_Score=309, Evalue=5e-84, Organism=Homo sapiens, GI10947135, Length=539, Percent_Identity=36.734693877551, Blast_Score=309, Evalue=5e-84, Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=26.8518518518519, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1789751, Length=636, Percent_Identity=40.251572327044, Blast_Score=465, Evalue=1e-132, Organism=Escherichia coli, GI1787041, Length=525, Percent_Identity=33.7142857142857, Blast_Score=313, Evalue=2e-86, Organism=Escherichia coli, GI1787182, Length=614, Percent_Identity=28.3387622149837, Blast_Score=230, Evalue=2e-61, Organism=Escherichia coli, GI2367384, Length=523, Percent_Identity=28.8718929254302, Blast_Score=181, Evalue=1e-46, Organism=Escherichia coli, GI1788165, Length=198, Percent_Identity=26.2626262626263, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1788506, Length=223, Percent_Identity=27.8026905829596, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87081791, Length=212, Percent_Identity=30.6603773584906, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1789864, Length=221, Percent_Identity=28.5067873303167, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1786319, Length=209, Percent_Identity=30.1435406698565, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1787370, Length=215, Percent_Identity=26.046511627907, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787758, Length=201, Percent_Identity=27.363184079602, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788644, Length=235, Percent_Identity=28.936170212766, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=24.2990654205607, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17553372, Length=530, Percent_Identity=35.8490566037736, Blast_Score=345, Evalue=4e-95, Organism=Caenorhabditis elegans, GI17555318, Length=526, Percent_Identity=35.9315589353612, Blast_Score=340, Evalue=9e-94, Organism=Caenorhabditis elegans, GI17559834, Length=546, Percent_Identity=35.5311355311355, Blast_Score=318, Evalue=5e-87, Organism=Caenorhabditis elegans, GI17555800, Length=496, Percent_Identity=23.1854838709677, Blast_Score=86, Evalue=8e-17, Organism=Caenorhabditis elegans, GI115533608, Length=220, Percent_Identity=30.9090909090909, Blast_Score=69, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=545, Percent_Identity=34.6788990825688, Blast_Score=352, Evalue=9e-98, Organism=Saccharomyces cerevisiae, GI6320874, Length=527, Percent_Identity=33.5863377609108, Blast_Score=308, Evalue=2e-84, Organism=Saccharomyces cerevisiae, GI6325030, Length=408, Percent_Identity=28.921568627451, Blast_Score=144, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6324314, Length=438, Percent_Identity=25.5707762557078, Blast_Score=129, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6323278, Length=436, Percent_Identity=25.4587155963303, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI24666836, Length=527, Percent_Identity=38.3301707779886, Blast_Score=382, Evalue=1e-106, Organism=Drosophila melanogaster, GI24642252, Length=550, Percent_Identity=36.5454545454545, Blast_Score=349, Evalue=3e-96, Organism=Drosophila melanogaster, GI18859989, Length=550, Percent_Identity=36.5454545454545, Blast_Score=349, Evalue=3e-96, Organism=Drosophila melanogaster, GI24641342, Length=534, Percent_Identity=36.3295880149813, Blast_Score=340, Evalue=2e-93, Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=29.9065420560748, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007328, Length=214, Percent_Identity=29.9065420560748, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007184, Length=190, Percent_Identity=29.4736842105263, Blast_Score=72, Evalue=2e-12, Organism=Drosophila melanogaster, GI221500365, Length=190, Percent_Identity=29.4736842105263, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 69067; Mature: 69067
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNINDLSLRVAGRLLIEQASLTLPAGTKAGLVGRNGTGKTTLFRAITGELSPETGSISL CCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEC PKGTRIGQVAQEAPGTEEPLIDIVLKADTERDRLMREAETAEDPHRIAEIQTRLADIDAH CCCCCHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC SAEARAAAILAGLGFGPAAQKRPASSFSGGWRMRVALAAVLFAEPDLLLLDEPTNYLDLE CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEECC GTLWLEGYLAKYPYTVLLISHDRDLLNHAVNNIVHLEGKKLTFWRGGYDQFARQYAEKAE CEEEEEHHHHCCCEEEEEEECCHHHHHHHHHHEEEECCCEEEEEECCHHHHHHHHHHHHH LQEKMRTKQEAQKKHMEAFVERFRAKASKARQAQSRLKALERMKPIAATVNENVRPFRFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC NPVKTVASPIVAIDSGAVGYEPGRPILKNLTLRIDNDDRIALLGSNGNGKSTFAKLIAGR CHHHHHHCCEEEECCCCCCCCCCCCHHCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHH LKLESGTMTLAPGLKVSIFAQHQLDDLRPEENAHQHVRRLMPDAPEAKVRARVAQFGLST HEECCCCEEECCCCEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCH EKMDTPAKELSGGEKARLLMGLASFEAPHLFILDEPTNHLDIDSREALVEALNEFEGAVI HHCCCCHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE LISHDRHLIEACADRLWLVNHGTVQPYDGDMEDYRALTTGGGSRNRERREADKASKADRR EEECCHHHHHHHHHHEEEEECCCCCCCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHH REAAKRRAALEPLAKEIKATEGLIERTRKRIEAIEAQMADPGLYARDPGKISTLGKERAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHH LAQALARQEEKWLELSTEYEEGVAE HHHHHHHHHHHHHHHCCHHHCCCCC >Mature Secondary Structure MLNINDLSLRVAGRLLIEQASLTLPAGTKAGLVGRNGTGKTTLFRAITGELSPETGSISL CCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEC PKGTRIGQVAQEAPGTEEPLIDIVLKADTERDRLMREAETAEDPHRIAEIQTRLADIDAH CCCCCHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC SAEARAAAILAGLGFGPAAQKRPASSFSGGWRMRVALAAVLFAEPDLLLLDEPTNYLDLE CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEECC GTLWLEGYLAKYPYTVLLISHDRDLLNHAVNNIVHLEGKKLTFWRGGYDQFARQYAEKAE CEEEEEHHHHCCCEEEEEEECCHHHHHHHHHHEEEECCCEEEEEECCHHHHHHHHHHHHH LQEKMRTKQEAQKKHMEAFVERFRAKASKARQAQSRLKALERMKPIAATVNENVRPFRFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC NPVKTVASPIVAIDSGAVGYEPGRPILKNLTLRIDNDDRIALLGSNGNGKSTFAKLIAGR CHHHHHHCCEEEECCCCCCCCCCCCHHCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHH LKLESGTMTLAPGLKVSIFAQHQLDDLRPEENAHQHVRRLMPDAPEAKVRARVAQFGLST HEECCCCEEECCCCEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCH EKMDTPAKELSGGEKARLLMGLASFEAPHLFILDEPTNHLDIDSREALVEALNEFEGAVI HHCCCCHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE LISHDRHLIEACADRLWLVNHGTVQPYDGDMEDYRALTTGGGSRNRERREADKASKADRR EEECCHHHHHHHHHHEEEEECCCCCCCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHH REAAKRRAALEPLAKEIKATEGLIERTRKRIEAIEAQMADPGLYARDPGKISTLGKERAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHH LAQALARQEEKWLELSTEYEEGVAE HHHHHHHHHHHHHHHCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]