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The map label for this gene is rarA [H]

Identifier: 110634002

GI number: 110634002

Start: 1778709

End: 1780031

Strand: Reverse

Name: rarA [H]

Synonym: Meso_1650

Alternate gene names: 110634002

Gene position: 1780031-1778709 (Counterclockwise)

Preceding gene: 110634003

Following gene: 110634001

Centisome position: 40.34

GC content: 63.49

Gene sequence:

>1323_bases
ATGAGCGACCTTTTCAACAGAAGTGAGCCTCACGCTCCGGCCGAAGTGGGCAAGCCGCTGGCGGACCGGCTGCGGCCGAA
ACGGCTTGACGAAGTGGTGGGCCAGGAGCACCTGACGGGCCCTGAGGGGGCGCTCACGCGCATGATCCGCTCGGGCTCGC
TCGGCTCGCTCGTTTTCTGGGGACCTCCTGGCACCGGGAAGACTACAGTCGCCCGGCTGCTTGCGGGGGAAACCTCCATG
GCATTCGAGCAGATCTCTGCGATCTTCTCCGGCGTGGCCGACCTCAAGAAAGTCTTTGAAGCCGCACGCCTGCGCCGCAG
CCAGGGCCGGCAGACCCTTCTGTTCGTCGATGAAATTCACCGGTTCAACCGCGCGCAGCAGGATTCCTTCCTGCCGGTGA
TGGAGGACGGCACTGTTGTCTTGGTGGGCGCGACGACGGAAAATCCGTCTTTCGAGCTCAACGCGGCGCTTCTCTCGCGC
GCCCGCGTGCTCGTTTTTCATTCGCTCGAAGCGAACAGCCTCGAAAACCTGCTTCAGCGCGCCGAGGAGGCGGAAGGGCG
CAAGCTGCCGCTTACGGAGGAGGCGAGGGCGGTGCTGCTGCGCATGGCCGATGGCGACGGGCGAGCCGTGCTGACGCTTG
CAGAAGAGGTCTGGCGGGCCGCCAATGAGGGCGAGGTGTTCGATGCGGAAGCCCTGCAGCGCATCGTCCAGCGCCCCGCG
CCGATCTACGACAAGGGGCAGGACGGGTATTACAATTTGATTTCCGCGCTGCACAAGTCCGTTCGCGGCTCGGATCCGGA
CGCCGCGCTCTATTATCTCTGCCGCATGTTCGATGCCGGCGAGGATCCGCTTTATTTGGGGCGCCGGCTCGTGCGCATGG
CGGTGGAGGATATCGGTTTGGCGGACCCGCAGGCGCTGGTGATCGCCAATGCCGCCAAGGACGCTTACGACTATCTGGGC
TCGCCCGAAGGCGAGCTCGCGCTCGCGCAGGCCTGCGTCTATCTCGCCACCGCGCCGAAATCGAATGCCGTCTACACCGC
ATTCAAAGCCGCTATGAGGGCGGCAAAGGAGCATGGCTCGCTGCTTCCTCCCAAGCACATCCTTAATGCGCCGACGAAGC
TCATGAAGGAAACGGGCTACGGCTCAGGCTACCAGTACGACCACGATATGCCCGATGCCTTCTCGGGCCAGGACTATTTT
CCCGAAGCCATGGACAGGCAAAGCTTCTACAATCCGCCCGATCGCGGATTCGAGCGCGAGATCCGCAAGCGGCTCGAATA
TTGGAAGAAGCTCAGGCGGGAAAGGCAGGGCGGTGAGCACTAG

Upstream 100 bases:

>100_bases
CGGACCGAGAGTGATACCGGTTGGAGAAGTCCGATGCTGAAACAAAGAGATGGATCGCCACCTCCGCGCCCGGAAGGGTG
TATGGCGATCTAGTGAGCAT

Downstream 100 bases:

>100_bases
ATTTCATCTCTGATGTTCGAATCGCTTCCCTGGCCGGTATCAATGGCTTCTTTGGTTTGTGCCTGAACATTCCAACTCAC
CAGCGGCCAAATATTGTTTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MSDLFNRSEPHAPAEVGKPLADRLRPKRLDEVVGQEHLTGPEGALTRMIRSGSLGSLVFWGPPGTGKTTVARLLAGETSM
AFEQISAIFSGVADLKKVFEAARLRRSQGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSR
ARVLVFHSLEANSLENLLQRAEEAEGRKLPLTEEARAVLLRMADGDGRAVLTLAEEVWRAANEGEVFDAEALQRIVQRPA
PIYDKGQDGYYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYLGRRLVRMAVEDIGLADPQALVIANAAKDAYDYLG
SPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKEHGSLLPPKHILNAPTKLMKETGYGSGYQYDHDMPDAFSGQDYF
PEAMDRQSFYNPPDRGFEREIRKRLEYWKKLRRERQGGEH

Sequences:

>Translated_440_residues
MSDLFNRSEPHAPAEVGKPLADRLRPKRLDEVVGQEHLTGPEGALTRMIRSGSLGSLVFWGPPGTGKTTVARLLAGETSM
AFEQISAIFSGVADLKKVFEAARLRRSQGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSR
ARVLVFHSLEANSLENLLQRAEEAEGRKLPLTEEARAVLLRMADGDGRAVLTLAEEVWRAANEGEVFDAEALQRIVQRPA
PIYDKGQDGYYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYLGRRLVRMAVEDIGLADPQALVIANAAKDAYDYLG
SPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKEHGSLLPPKHILNAPTKLMKETGYGSGYQYDHDMPDAFSGQDYF
PEAMDRQSFYNPPDRGFEREIRKRLEYWKKLRRERQGGEH
>Mature_439_residues
SDLFNRSEPHAPAEVGKPLADRLRPKRLDEVVGQEHLTGPEGALTRMIRSGSLGSLVFWGPPGTGKTTVARLLAGETSMA
FEQISAIFSGVADLKKVFEAARLRRSQGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRA
RVLVFHSLEANSLENLLQRAEEAEGRKLPLTEEARAVLLRMADGDGRAVLTLAEEVWRAANEGEVFDAEALQRIVQRPAP
IYDKGQDGYYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYLGRRLVRMAVEDIGLADPQALVIANAAKDAYDYLGS
PEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKEHGSLLPPKHILNAPTKLMKETGYGSGYQYDHDMPDAFSGQDYFP
EAMDRQSFYNPPDRGFEREIRKRLEYWKKLRRERQGGEH

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=41.0958904109589, Blast_Score=313, Evalue=2e-85,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=37.2146118721461, Blast_Score=261, Evalue=1e-69,
Organism=Escherichia coli, GI1787119, Length=423, Percent_Identity=48.2269503546099, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1788167, Length=120, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=41.1347517730496, Blast_Score=301, Evalue=1e-82,
Organism=Saccharomyces cerevisiae, GI6324039, Length=206, Percent_Identity=29.6116504854369, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48830; Mature: 48699

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFNRSEPHAPAEVGKPLADRLRPKRLDEVVGQEHLTGPEGALTRMIRSGSLGSLVFW
CCCCCCCCCCCCCHHHCCCHHHHCCHHHHHHHHCHHHCCCCHHHHHHHHHCCCCCCEEEE
GPPGTGKTTVARLLAGETSMAFEQISAIFSGVADLKKVFEAARLRRSQGRQTLLFVDEIH
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
RFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLEANSLENLLQR
HHHHHCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHH
AEEAEGRKLPLTEEARAVLLRMADGDGRAVLTLAEEVWRAANEGEVFDAEALQRIVQRPA
HHHCCCCCCCCCHHHHHHHHEECCCCCCEEHHHHHHHHHCCCCCCEECHHHHHHHHHCCC
PIYDKGQDGYYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYLGRRLVRMAVEDIGL
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
ADPQALVIANAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKEHGS
CCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
LLPPKHILNAPTKLMKETGYGSGYQYDHDMPDAFSGQDYFPEAMDRQSFYNPPDRGFERE
CCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
IRKRLEYWKKLRRERQGGEH
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLFNRSEPHAPAEVGKPLADRLRPKRLDEVVGQEHLTGPEGALTRMIRSGSLGSLVFW
CCCCCCCCCCCCHHHCCCHHHHCCHHHHHHHHCHHHCCCCHHHHHHHHHCCCCCCEEEE
GPPGTGKTTVARLLAGETSMAFEQISAIFSGVADLKKVFEAARLRRSQGRQTLLFVDEIH
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
RFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLEANSLENLLQR
HHHHHCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHH
AEEAEGRKLPLTEEARAVLLRMADGDGRAVLTLAEEVWRAANEGEVFDAEALQRIVQRPA
HHHCCCCCCCCCHHHHHHHHEECCCCCCEEHHHHHHHHHCCCCCCEECHHHHHHHHHCCC
PIYDKGQDGYYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYLGRRLVRMAVEDIGL
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
ADPQALVIANAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKEHGS
CCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
LLPPKHILNAPTKLMKETGYGSGYQYDHDMPDAFSGQDYFPEAMDRQSFYNPPDRGFERE
CCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
IRKRLEYWKKLRRERQGGEH
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]