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The map label for this gene is ynaI [C]

Identifier: 110633853

GI number: 110633853

Start: 1596637

End: 1598481

Strand: Reverse

Name: ynaI [C]

Synonym: Meso_1500

Alternate gene names: 110633853

Gene position: 1598481-1596637 (Counterclockwise)

Preceding gene: 110633854

Following gene: 110633850

Centisome position: 36.23

GC content: 57.29

Gene sequence:

>1845_bases
ATGCGAACTACCGCCGTTGCACATTCCCTTTGGTTGCTGCTCTTTTGGGTTCTGATCCAACCGCATCCCGCATCAGCCCA
GAGCCATGCCGGCGACCCGAGCTATATCCACGCTGATCTGGCCAGTCCGCAGGACACGCTGAACACTTTTTTGTCGAGCA
CCGAAAAGGCCGCTGCACTTATGCTTGAGGCCTATAGCCAAAGGCAGGCCGAGGGAGGTCTTTTTCCCTCTGATTCGGTC
GAGGAGAAAGTCACCACGGCAGAGCTCCTGCTGGATACCGCGGCGCGCACCCTCGATTTATCCAACGTCCCGCCGGCGGC
TATCGCGCACGAGAAGATGGAACTTGTTTTGCGGCTCAAAGAGGTGCTCGAAGAGATTTCGCTCCCGCCGCAGGCCGAAA
TCCCGGATGAGGCAGCGCTGGAACAGGCGCATGCAGCCGATCGGCCGATAACGAGATGGAGAATACCGGGCACCGAATTG
GTCATGGTGCAAGTGGCTGAAGGTGGGCGGTCGGGCGACTTTGTCTTTTCCGCGGACACCGTAAGTCGTATTCCCGACCT
CTACAATGCCCTTGTGGCCGCTCCCGAGCGCTTTGACAGGCGAAATATCTATGAATTCTTCAGTTTGTCGCCAGGGCGTC
TTCTGCCGCCGTTTTGGTACGACTACATTCTCGCCGGTCCCGATTGGCTCAACTTCAGCCTTGCCGACCAAGCCGCCTGG
CCGTGGCTGGCGCTCATTGTCTGGATGATCGTATCTGCCACGGTTCTCCTCTGGATCGTGCGAAAGCAGTGGGGTGTACG
AAGGGCTGATGGCGCGAAGCTCAATCTGATCGAACGCGCCCTTCTGCCGGTTGCGCTGATCGCCCTCTCGGCTTTCTTCC
TTTTTGAAGTCATCGATCAGATCAATCTGACCGGGAGGGTTTTTCTGATTGCAAACGCCGCCGGGCAGGTGCTGCTTGCA
TTCGGGCTTTCATGGCTCATTGTACTGATCTGCCAATCCCTAGCGGAGCTTATCATCAGTTCGCCCTCCATTTTGCCGGA
TAGCTTGGACGCGCATCTGCTCCGAGCGGGGTTCCGGGTGCTTGGACTGGGTCTCGCGCTGATCCTGCTCGGCCATACTG
CAACGACTCTGGGAATACCGTTGCTCGGTCTTATCGCCGGACTGGGGGTGGGCGGACTTGCCATTGCGCTCGCGGCACAG
CCGACCATCGAGAATTTCATCGGGGGCGTAATCCTCTTCGCCGACAGGCCGGTCCGAATGGGAGATTTCTGCCGCTGCGG
AGATGTCATGGGCACAGTTGAAGAGATCGGGTTGCGCTCCACCCGCATCAGAGCGTTGGATCGCACAGTCGTAAGCATTC
CGAACGCAGAATTCGCTAAGGCGCAGATCGTCAACTTTGCGAGACGAGACCAGCAGCTTTTCGAGGCGAAGATCGGCATC
AGGTTCGAAGCCTCGCGAGCAGCACTGGAACACCTGCTCGTAGAACTGCGCGAACTCATCGAAAGCAATCTAACAGCCGT
GCCCGGCACCACTCGAGTCCGGTTCAGCTCGATCGGCAGCAGTGCTCTTGAAATTGACCTTCGCGCTTACTTGCAGATTT
CAGATTTCGATGTCTTCCTCGCTGAAAAGGAGAAAATTCTCCTATCGGTCATGAGCATTGTCGAAAATGCGGGATGCGGC
TTCGCATTTCCTTCACAAACGCTCTATCTGACGCGAGACAAGCCGCCCGCTTTGGAAGTGCCCGATCGCCATACGCGGGA
AGAAGAGCCATTGGGTGAAATGCCCCGCGCACAGGCAGAGGAATCAAAGATCCGCGCCGTTACACGAACCTCACCGAGAA
ATTAG

Upstream 100 bases:

>100_bases
CTTTCATTATCCGGGCAAATCTCGATGCGCAGCCGATTCCTCTCTTGCGGACCTGAGAGCGTGCGCCTGATTCAGTTGGC
CATTGTTGTGGAACTTGCTC

Downstream 100 bases:

>100_bases
GTCGCCGCATTGAGGAGCCACAGGGGTGGAAAGAACTTCCCTCCCCCGAGGTCAGGCGAATAAGGTTCCCTCCGCCAGCT
TGACGGCGGCTCCGCCAATG

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MRTTAVAHSLWLLLFWVLIQPHPASAQSHAGDPSYIHADLASPQDTLNTFLSSTEKAAALMLEAYSQRQAEGGLFPSDSV
EEKVTTAELLLDTAARTLDLSNVPPAAIAHEKMELVLRLKEVLEEISLPPQAEIPDEAALEQAHAADRPITRWRIPGTEL
VMVQVAEGGRSGDFVFSADTVSRIPDLYNALVAAPERFDRRNIYEFFSLSPGRLLPPFWYDYILAGPDWLNFSLADQAAW
PWLALIVWMIVSATVLLWIVRKQWGVRRADGAKLNLIERALLPVALIALSAFFLFEVIDQINLTGRVFLIANAAGQVLLA
FGLSWLIVLICQSLAELIISSPSILPDSLDAHLLRAGFRVLGLGLALILLGHTATTLGIPLLGLIAGLGVGGLAIALAAQ
PTIENFIGGVILFADRPVRMGDFCRCGDVMGTVEEIGLRSTRIRALDRTVVSIPNAEFAKAQIVNFARRDQQLFEAKIGI
RFEASRAALEHLLVELRELIESNLTAVPGTTRVRFSSIGSSALEIDLRAYLQISDFDVFLAEKEKILLSVMSIVENAGCG
FAFPSQTLYLTRDKPPALEVPDRHTREEEPLGEMPRAQAEESKIRAVTRTSPRN

Sequences:

>Translated_614_residues
MRTTAVAHSLWLLLFWVLIQPHPASAQSHAGDPSYIHADLASPQDTLNTFLSSTEKAAALMLEAYSQRQAEGGLFPSDSV
EEKVTTAELLLDTAARTLDLSNVPPAAIAHEKMELVLRLKEVLEEISLPPQAEIPDEAALEQAHAADRPITRWRIPGTEL
VMVQVAEGGRSGDFVFSADTVSRIPDLYNALVAAPERFDRRNIYEFFSLSPGRLLPPFWYDYILAGPDWLNFSLADQAAW
PWLALIVWMIVSATVLLWIVRKQWGVRRADGAKLNLIERALLPVALIALSAFFLFEVIDQINLTGRVFLIANAAGQVLLA
FGLSWLIVLICQSLAELIISSPSILPDSLDAHLLRAGFRVLGLGLALILLGHTATTLGIPLLGLIAGLGVGGLAIALAAQ
PTIENFIGGVILFADRPVRMGDFCRCGDVMGTVEEIGLRSTRIRALDRTVVSIPNAEFAKAQIVNFARRDQQLFEAKIGI
RFEASRAALEHLLVELRELIESNLTAVPGTTRVRFSSIGSSALEIDLRAYLQISDFDVFLAEKEKILLSVMSIVENAGCG
FAFPSQTLYLTRDKPPALEVPDRHTREEEPLGEMPRAQAEESKIRAVTRTSPRN
>Mature_614_residues
MRTTAVAHSLWLLLFWVLIQPHPASAQSHAGDPSYIHADLASPQDTLNTFLSSTEKAAALMLEAYSQRQAEGGLFPSDSV
EEKVTTAELLLDTAARTLDLSNVPPAAIAHEKMELVLRLKEVLEEISLPPQAEIPDEAALEQAHAADRPITRWRIPGTEL
VMVQVAEGGRSGDFVFSADTVSRIPDLYNALVAAPERFDRRNIYEFFSLSPGRLLPPFWYDYILAGPDWLNFSLADQAAW
PWLALIVWMIVSATVLLWIVRKQWGVRRADGAKLNLIERALLPVALIALSAFFLFEVIDQINLTGRVFLIANAAGQVLLA
FGLSWLIVLICQSLAELIISSPSILPDSLDAHLLRAGFRVLGLGLALILLGHTATTLGIPLLGLIAGLGVGGLAIALAAQ
PTIENFIGGVILFADRPVRMGDFCRCGDVMGTVEEIGLRSTRIRALDRTVVSIPNAEFAKAQIVNFARRDQQLFEAKIGI
RFEASRAALEHLLVELRELIESNLTAVPGTTRVRFSSIGSSALEIDLRAYLQISDFDVFLAEKEKILLSVMSIVENAGCG
FAFPSQTLYLTRDKPPALEVPDRHTREEEPLGEMPRAQAEESKIRAVTRTSPRN

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=307, Percent_Identity=29.3159609120521, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1789291, Length=297, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1786670, Length=209, Percent_Identity=25.3588516746411, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI2367355, Length=216, Percent_Identity=26.3888888888889, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 67368; Mature: 67368

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTAVAHSLWLLLFWVLIQPHPASAQSHAGDPSYIHADLASPQDTLNTFLSSTEKAAAL
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
MLEAYSQRQAEGGLFPSDSVEEKVTTAELLLDTAARTLDLSNVPPAAIAHEKMELVLRLK
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHH
EVLEEISLPPQAEIPDEAALEQAHAADRPITRWRIPGTELVMVQVAEGGRSGDFVFSADT
HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEEEECCCCCCCEEEECHH
VSRIPDLYNALVAAPERFDRRNIYEFFSLSPGRLLPPFWYDYILAGPDWLNFSLADQAAW
HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEECCHHCCC
PWLALIVWMIVSATVLLWIVRKQWGVRRADGAKLNLIERALLPVALIALSAFFLFEVIDQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INLTGRVFLIANAAGQVLLAFGLSWLIVLICQSLAELIISSPSILPDSLDAHLLRAGFRV
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LGLGLALILLGHTATTLGIPLLGLIAGLGVGGLAIALAAQPTIENFIGGVILFADRPVRM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCEEEEECCCCCC
GDFCRCGDVMGTVEEIGLRSTRIRALDRTVVSIPNAEFAKAQIVNFARRDQQLFEAKIGI
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
RFEASRAALEHLLVELRELIESNLTAVPGTTRVRFSSIGSSALEIDLRAYLQISDFDVFL
EEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHCCCCCEEEEEEEEEEECCCEEEH
AEKEKILLSVMSIVENAGCGFAFPSQTLYLTRDKPPALEVPDRHTREEEPLGEMPRAQAE
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH
ESKIRAVTRTSPRN
HHHHHHHHCCCCCC
>Mature Secondary Structure
MRTTAVAHSLWLLLFWVLIQPHPASAQSHAGDPSYIHADLASPQDTLNTFLSSTEKAAAL
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
MLEAYSQRQAEGGLFPSDSVEEKVTTAELLLDTAARTLDLSNVPPAAIAHEKMELVLRLK
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHH
EVLEEISLPPQAEIPDEAALEQAHAADRPITRWRIPGTELVMVQVAEGGRSGDFVFSADT
HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEEEECCCCCCCEEEECHH
VSRIPDLYNALVAAPERFDRRNIYEFFSLSPGRLLPPFWYDYILAGPDWLNFSLADQAAW
HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEECCHHCCC
PWLALIVWMIVSATVLLWIVRKQWGVRRADGAKLNLIERALLPVALIALSAFFLFEVIDQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INLTGRVFLIANAAGQVLLAFGLSWLIVLICQSLAELIISSPSILPDSLDAHLLRAGFRV
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LGLGLALILLGHTATTLGIPLLGLIAGLGVGGLAIALAAQPTIENFIGGVILFADRPVRM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCEEEEECCCCCC
GDFCRCGDVMGTVEEIGLRSTRIRALDRTVVSIPNAEFAKAQIVNFARRDQQLFEAKIGI
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
RFEASRAALEHLLVELRELIESNLTAVPGTTRVRFSSIGSSALEIDLRAYLQISDFDVFL
EEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHCCCCCEEEEEEEEEEECCCEEEH
AEKEKILLSVMSIVENAGCGFAFPSQTLYLTRDKPPALEVPDRHTREEEPLGEMPRAQAE
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH
ESKIRAVTRTSPRN
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]