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The map label for this gene is yqgF [C]

Identifier: 110633714

GI number: 110633714

Start: 1454980

End: 1455462

Strand: Reverse

Name: yqgF [C]

Synonym: Meso_1361

Alternate gene names: 110633714

Gene position: 1455462-1454980 (Counterclockwise)

Preceding gene: 110633724

Following gene: 110633712

Centisome position: 32.99

GC content: 64.6

Gene sequence:

>483_bases
GTGAGCGTTGTTTCCATTGAGGAACTGGAAAAGGCCAGGGCCTATGGCCGGCCGCTCGCTGGGCTCGACCTCGGCACGAA
AACGATCGGCGTTGCGATTTCCGATCTTGGCCTTTCCTTCGCCACGCCGCGCGCGTATCTCCCGCGCAAGAAGTTTCAGG
AGGATGCGAAGGCGCTCCTTCATCTTCTTTCCCGCGAGAATGCCGGCGGCGTCATTGTCGGCCTGCCCATCAATATGGAT
GGCAGCGAGGGCCCCCGTGCCCAGTCCACGCGCGCCTTCGTGCGCAACCTCCAGCCATTGACAAAACTGCCCTTCGCCTT
CTGGGACGAGCGTCTTTCCACGGTCGCGGCCGAGCGGGCACTGATCGAGATGGATGTCTCGCGGGCCAAACGCGCGCAAC
GCATCGATTCAGCGGCGGCGGCCTTCATCCTGCAGGGCGCGCTCGACCGCCTTCAGGCCTTGCGTGCGGACCCCGGCGGG
TAG

Upstream 100 bases:

>100_bases
AGCGGAATGGCCATACCAGGTTATTTTCATGCCGGGACTCCTCGATGGTTTGCGCAAAGGATAAAACGGGAAGAGATCGT
GTCAAATCAGGGATACCGGC

Downstream 100 bases:

>100_bases
AAGCCAAGGCGCTCACATCGCCTCGGGGTAGAGCATATCCAGGATGGCTACCGCATCATATCGCGCATCGAGCATTCCGT
AGGTGCCGCGCCATTGGCCG

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALLHLLSRENAGGVIVGLPINMD
GSEGPRAQSTRAFVRNLQPLTKLPFAFWDERLSTVAAERALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPGG

Sequences:

>Translated_160_residues
MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALLHLLSRENAGGVIVGLPINMD
GSEGPRAQSTRAFVRNLQPLTKLPFAFWDERLSTVAAERALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPGG
>Mature_159_residues
SVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALLHLLSRENAGGVIVGLPINMDG
SEGPRAQSTRAFVRNLQPLTKLPFAFWDERLSTVAAERALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPGG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=36.2962962962963, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_MESSB (Q11IL8)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_673922.1
- ProteinModelPortal:   Q11IL8
- SMR:   Q11IL8
- STRING:   Q11IL8
- GeneID:   4181556
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_1361
- NMPDR:   fig|266779.1.peg.2231
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q11IL8
- BioCyc:   MSP266779:MESO_1361-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17270; Mature: 17139

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL
CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHH
HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVRNLQPLTKLPFAFWDERLSTVAAERA
HHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHH
LIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL
CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHH
HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVRNLQPLTKLPFAFWDERLSTVAAERA
HHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHH
LIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA