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The map label for this gene is dppB [C]

Identifier: 110633665

GI number: 110633665

Start: 1402951

End: 1403907

Strand: Reverse

Name: dppB [C]

Synonym: Meso_1312

Alternate gene names: 110633665

Gene position: 1403907-1402951 (Counterclockwise)

Preceding gene: 110633666

Following gene: 110633664

Centisome position: 31.82

GC content: 63.11

Gene sequence:

>957_bases
ATGACCGCCTATCTCCTTCGCCGCCTTGCCATCGCGGTTGCCACTCTTTTCGTGGCTTCTCTCGTGGTGTTTTCCGTCCT
GGAAATCCTGCCGGGCGATCCCGCGCGCCTCATGCTGGGCTTGAATGCCAGTCCCGATGCGCTCGCAGCCCTACGCACGG
AGATGGGGCTCGACCGGCCCCTTGCCGCCCGTTATCTTGACTGGCTCGGCGGGATGATCACAGGGGATTTCGGCCGCTCG
CTCACCTATTCCTCGCCAGTGATCGATCTCGTCAAGGAACGGCTCGCCGTCTCTTTTCCGCTTGCGCTCATTGCGCTCAC
CCTCTCGACGATTATCGCCATCCCGGTCGGTGTTTTCGCGGCGGCAAGGCGTGGGAAGGCGGCCGATACCGTGGCCATGG
GGTTGGCGCAGGTGGGCGTGGCCGTGCCCAATTTCTGGTTCGCACTGCTTCTCGTCTATGTTTTCGCCGTTAGCCTGAGG
CTCGTTCCGGCTGGAGGGTTTCCGGGATGGGGCGATAGCTGGGCGAGCCACTGGCAAGCGCTGAGGGCGCTCATCCTGCC
CGCGATTTCCCTTGCCCTTCCCCAGGCCGCGATTCTTGCCCGCGTGACGCGCTCCGCCACGGTGGAGGTGCTGGGTGAGG
ATTACATCCGCACCGCCCGCGCCAAAGGGCTGCCGTACCGCAGGGTACTGTGGCGGCACGCGCTGCGCAATGCGATGATC
CCCGTGCTCACCATCATGGGCCTGCAATTCGCTTTCCTTCTCGCCGGTACCATCATCATCGAAAATGTGTTCTACCTGCC
GGGATTGGGCCGGCTCATTTTCCAAGCCATCAGCCAGCGCGACCTGATCGTGGTGGAAGGCGTCGTGATGCTGCTCGTCG
CGAGCGTCATCCTCATCAACCTTGTCGTCGACATTTGCTACACGATCGTCGATCCCCGCCTGAGGGGCGGCCGATGA

Upstream 100 bases:

>100_bases
GGCGACAGTTGATCTCTCCCCTTGAGGGGGAAATGGCCGGCAGGCCAGAGGGGGGTACGAAAGGGCACCGACGAGCCGAG
CCAGAGACGAGGCGGGTTCG

Downstream 100 bases:

>100_bases
GCCTCGATCCGGTTCCCGCGCCTCAGCGCCGACGGATGCGCGGCGCGCTCTCCAACCGCTCGTTCCTGGTGGGGCTCGTC
ATCACCGGAGCGGTGATCCT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTAYLLRRLAIAVATLFVASLVVFSVLEILPGDPARLMLGLNASPDALAALRTEMGLDRPLAARYLDWLGGMITGDFGRS
LTYSSPVIDLVKERLAVSFPLALIALTLSTIIAIPVGVFAAARRGKAADTVAMGLAQVGVAVPNFWFALLLVYVFAVSLR
LVPAGGFPGWGDSWASHWQALRALILPAISLALPQAAILARVTRSATVEVLGEDYIRTARAKGLPYRRVLWRHALRNAMI
PVLTIMGLQFAFLLAGTIIIENVFYLPGLGRLIFQAISQRDLIVVEGVVMLLVASVILINLVVDICYTIVDPRLRGGR

Sequences:

>Translated_318_residues
MTAYLLRRLAIAVATLFVASLVVFSVLEILPGDPARLMLGLNASPDALAALRTEMGLDRPLAARYLDWLGGMITGDFGRS
LTYSSPVIDLVKERLAVSFPLALIALTLSTIIAIPVGVFAAARRGKAADTVAMGLAQVGVAVPNFWFALLLVYVFAVSLR
LVPAGGFPGWGDSWASHWQALRALILPAISLALPQAAILARVTRSATVEVLGEDYIRTARAKGLPYRRVLWRHALRNAMI
PVLTIMGLQFAFLLAGTIIIENVFYLPGLGRLIFQAISQRDLIVVEGVVMLLVASVILINLVVDICYTIVDPRLRGGR
>Mature_317_residues
TAYLLRRLAIAVATLFVASLVVFSVLEILPGDPARLMLGLNASPDALAALRTEMGLDRPLAARYLDWLGGMITGDFGRSL
TYSSPVIDLVKERLAVSFPLALIALTLSTIIAIPVGVFAAARRGKAADTVAMGLAQVGVAVPNFWFALLLVYVFAVSLRL
VPAGGFPGWGDSWASHWQALRALILPAISLALPQAAILARVTRSATVEVLGEDYIRTARAKGLPYRRVLWRHALRNAMIP
VLTIMGLQFAFLLAGTIIIENVFYLPGLGRLIFQAISQRDLIVVEGVVMLLVASVILINLVVDICYTIVDPRLRGGR

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=40, Blast_Score=241, Evalue=4e-65,
Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=40, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=37.6582278481013, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1789888, Length=318, Percent_Identity=37.1069182389937, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI1787761, Length=318, Percent_Identity=35.5345911949685, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=29.9450549450549, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=32.8358208955224, Blast_Score=144, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34339; Mature: 34207

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAYLLRRLAIAVATLFVASLVVFSVLEILPGDPARLMLGLNASPDALAALRTEMGLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHHCCCCH
LAARYLDWLGGMITGDFGRSLTYSSPVIDLVKERLAVSFPLALIALTLSTIIAIPVGVFA
HHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARRGKAADTVAMGLAQVGVAVPNFWFALLLVYVFAVSLRLVPAGGFPGWGDSWASHWQA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHH
LRALILPAISLALPQAAILARVTRSATVEVLGEDYIRTARAKGLPYRRVLWRHALRNAMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
PVLTIMGLQFAFLLAGTIIIENVFYLPGLGRLIFQAISQRDLIVVEGVVMLLVASVILIN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LVVDICYTIVDPRLRGGR
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TAYLLRRLAIAVATLFVASLVVFSVLEILPGDPARLMLGLNASPDALAALRTEMGLDRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHHCCCCH
LAARYLDWLGGMITGDFGRSLTYSSPVIDLVKERLAVSFPLALIALTLSTIIAIPVGVFA
HHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARRGKAADTVAMGLAQVGVAVPNFWFALLLVYVFAVSLRLVPAGGFPGWGDSWASHWQA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHH
LRALILPAISLALPQAAILARVTRSATVEVLGEDYIRTARAKGLPYRRVLWRHALRNAMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
PVLTIMGLQFAFLLAGTIIIENVFYLPGLGRLIFQAISQRDLIVVEGVVMLLVASVILIN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LVVDICYTIVDPRLRGGR
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]