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The map label for this gene is 110633654

Identifier: 110633654

GI number: 110633654

Start: 1393719

End: 1394624

Strand: Direct

Name: 110633654

Synonym: Meso_1301

Alternate gene names: NA

Gene position: 1393719-1394624 (Clockwise)

Preceding gene: 110633653

Following gene: 110633656

Centisome position: 31.59

GC content: 62.8

Gene sequence:

>906_bases
ATGCAACGCGAAGGCCGCGAGACGATCGCCGGCATTTCCTTGTCCCACCCGGACAAAGTGCTCTTCGAGTCCCAGGGCCT
GACAAAGGCCGATATTGCCCGGCATTATCTCCGGGTTGCCGATCGCATGCTCCCCGCGATCAGGAATCGTCTGGTGAGCC
TCGTGCGTTGCCCGGACGGCCCGAGCCAGGAATGCTTTTTCCAAAAGCATGCCGGCCGAGGGTTTCCCTCGGCAGTCAAG
CGGCGGGAAATCACCGAGAAGGATGGTGACAAGGCAGAATACCTCTATACTAACGACCTCAAGGGCATCGTCGCCGGCGT
CCAGATGAACACACTGGAGTTTCACATCTGGGGATCGCGAATCGATGCGATCGAAAAGCCCGATCGCCTCGTCTTCGATC
TCGATCCGGATGAAGGGCTAGGTTTTGCCGATGTGAAGCAGGCCTGCTTTGATCTGCGCCATCGCCTTGAGGGGCTTGGG
CTTCAAACGCTGCCAATGGTGACCGGCGGCAAGGGCATTCATGTGGTGGCGCCGCTTTCCCGCCGCGCGGAATGGCCGGA
GGTGAAGGCCTTCGCTCGCGCGCTTGCCTACCGCATGGGAGAGGAAGAACCGGAGCGCTTCCTGGCCCAGGCTTCCAAGG
AGAAGCGCAAGGGCCGCATCTTCATCGACTGGCTGAGGAACGAGCGCGGAGCGACAGCGATAGCTCCCTATTCGACGCGG
GCGCGGCAGGGCGCGCCGATCGCGATGCCCGTCTCGTGGGAGGAGTTGCGGGGACTGGATGCGGCCAACACCTTCCATGT
GCAGGATATGGAAGCGCGCATGGCGGCTCCGGATCCCTGGGCGGAGGCCGCCGGCTGGCGGCAGTCCATCACGAGGAAGC
TTCTGGAGAAGGCGGGCGCGGAGTAG

Upstream 100 bases:

>100_bases
GACATGTTCAACGAGACCGGGCGGTTCTAGGCGGCAGGAACCATTGGCGCGGCGTCTTTATTGGTAGGGGCGTTTTTCTT
CGGGATATTGAGGAGGCGGC

Downstream 100 bases:

>100_bases
CACGCATGATCCGGGCCGATCGGACACTTGAAGCGGCTCGCCCATAAGAAGGTCCGATATCGCCATAATCGCCGCGCGCC
TTATCAACACCGGGCCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQREGRETIAGISLSHPDKVLFESQGLTKADIARHYLRVADRMLPAIRNRLVSLVRCPDGPSQECFFQKHAGRGFPSAVK
RREITEKDGDKAEYLYTNDLKGIVAGVQMNTLEFHIWGSRIDAIEKPDRLVFDLDPDEGLGFADVKQACFDLRHRLEGLG
LQTLPMVTGGKGIHVVAPLSRRAEWPEVKAFARALAYRMGEEEPERFLAQASKEKRKGRIFIDWLRNERGATAIAPYSTR
ARQGAPIAMPVSWEELRGLDAANTFHVQDMEARMAAPDPWAEAAGWRQSITRKLLEKAGAE

Sequences:

>Translated_301_residues
MQREGRETIAGISLSHPDKVLFESQGLTKADIARHYLRVADRMLPAIRNRLVSLVRCPDGPSQECFFQKHAGRGFPSAVK
RREITEKDGDKAEYLYTNDLKGIVAGVQMNTLEFHIWGSRIDAIEKPDRLVFDLDPDEGLGFADVKQACFDLRHRLEGLG
LQTLPMVTGGKGIHVVAPLSRRAEWPEVKAFARALAYRMGEEEPERFLAQASKEKRKGRIFIDWLRNERGATAIAPYSTR
ARQGAPIAMPVSWEELRGLDAANTFHVQDMEARMAAPDPWAEAAGWRQSITRKLLEKAGAE
>Mature_301_residues
MQREGRETIAGISLSHPDKVLFESQGLTKADIARHYLRVADRMLPAIRNRLVSLVRCPDGPSQECFFQKHAGRGFPSAVK
RREITEKDGDKAEYLYTNDLKGIVAGVQMNTLEFHIWGSRIDAIEKPDRLVFDLDPDEGLGFADVKQACFDLRHRLEGLG
LQTLPMVTGGKGIHVVAPLSRRAEWPEVKAFARALAYRMGEEEPERFLAQASKEKRKGRIFIDWLRNERGATAIAPYSTR
ARQGAPIAMPVSWEELRGLDAANTFHVQDMEARMAAPDPWAEAAGWRQSITRKLLEKAGAE

Specific function: Unknown

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 33818; Mature: 33818

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQREGRETIAGISLSHPDKVLFESQGLTKADIARHYLRVADRMLPAIRNRLVSLVRCPDG
CCCCCCHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSQECFFQKHAGRGFPSAVKRREITEKDGDKAEYLYTNDLKGIVAGVQMNTLEFHIWGSR
CCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCEEEEEEEEEEECCH
IDAIEKPDRLVFDLDPDEGLGFADVKQACFDLRHRLEGLGLQTLPMVTGGKGIHVVAPLS
HHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCEEECCCCEEEECCHH
RRAEWPEVKAFARALAYRMGEEEPERFLAQASKEKRKGRIFIDWLRNERGATAIAPYSTR
HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHH
ARQGAPIAMPVSWEELRGLDAANTFHVQDMEARMAAPDPWAEAAGWRQSITRKLLEKAGA
HCCCCCEEECCCHHHHCCCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
E
C
>Mature Secondary Structure
MQREGRETIAGISLSHPDKVLFESQGLTKADIARHYLRVADRMLPAIRNRLVSLVRCPDG
CCCCCCHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSQECFFQKHAGRGFPSAVKRREITEKDGDKAEYLYTNDLKGIVAGVQMNTLEFHIWGSR
CCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCEEEEEEEEEEECCH
IDAIEKPDRLVFDLDPDEGLGFADVKQACFDLRHRLEGLGLQTLPMVTGGKGIHVVAPLS
HHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCEEECCCCEEEECCHH
RRAEWPEVKAFARALAYRMGEEEPERFLAQASKEKRKGRIFIDWLRNERGATAIAPYSTR
HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHH
ARQGAPIAMPVSWEELRGLDAANTFHVQDMEARMAAPDPWAEAAGWRQSITRKLLEKAGA
HCCCCCEEECCCHHHHCCCCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]