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The map label for this gene is ihfA

Identifier: 110633500

GI number: 110633500

Start: 1254048

End: 1254383

Strand: Direct

Name: ihfA

Synonym: Meso_1147

Alternate gene names: 110633500

Gene position: 1254048-1254383 (Clockwise)

Preceding gene: 110633499

Following gene: 110633501

Centisome position: 28.42

GC content: 61.9

Gene sequence:

>336_bases
ATGGGGGGAAAGACGGTGACACGAGCTGATCTCGCCGAGGCCGTTTACCGCAAGGTCGGCCTCTCGCGCACTGAGTCGGC
CCAGATCGTCGAGATGGTGTTGCAGGAAGTTTGCGACGCCATTGTGCGCGGCGAGACGGTCAAGCTGTCGTCTTTCGCCA
CCTTCCAGGTGCGAGAGAAGAACGAGCGGGTCGGCCGCAATCCGAAAACCGGCGAAGAGGTCCCCATTTCTCCGCGCCGG
GTGATGACCTTCAAGGCATCGAACGTGCTGAAGAGCCGTATTCTGCGCGCGCACCAGACCCGGAAGCCGAGCAAGGAGGC
GACTGCTTCATCCTAG

Upstream 100 bases:

>100_bases
ATGAGCGCGTTTTCTGGTTCTTGACCTCGCCCGTCCAATTTCTTAACGTTCCGGCCGCACTAGTATTTTCAATAGTTTCG
ATTGGATTGGGAAGAGCCGG

Downstream 100 bases:

>100_bases
CCGCCGGTCTCGCTGATCGGGGCGCCGATTAAGCCGATATTGCTCGCCGGGCACATTGGAAACCGTGCATCGGCGATCTC
TTTCCCTTGCGTTTCTGGCC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MGGKTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREKNERVGRNPKTGEEVPISPRR
VMTFKASNVLKSRILRAHQTRKPSKEATASS

Sequences:

>Translated_111_residues
MGGKTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREKNERVGRNPKTGEEVPISPRR
VMTFKASNVLKSRILRAHQTRKPSKEATASS
>Mature_110_residues
GGKTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREKNERVGRNPKTGEEVPISPRRV
MTFKASNVLKSRILRAHQTRKPSKEATASS

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=46.7391304347826, Blast_Score=100, Evalue=4e-23,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=31.4606741573034, Blast_Score=60, Evalue=3e-11,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=28.0898876404494, Blast_Score=59, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_MESSB (Q11J82)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_673708.1
- ProteinModelPortal:   Q11J82
- SMR:   Q11J82
- STRING:   Q11J82
- GeneID:   4180738
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_1147
- NMPDR:   fig|266779.1.peg.2439
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- PhylomeDB:   Q11J82
- ProtClustDB:   PRK00285
- BioCyc:   MSP266779:MESO_1147-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 12303; Mature: 12172

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGKTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREK
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCH
NERVGRNPKTGEEVPISPRRVMTFKASNVLKSRILRAHQTRKPSKEATASS
HHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GGKTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREK
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCH
NERVGRNPKTGEEVPISPRRVMTFKASNVLKSRILRAHQTRKPSKEATASS
HHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA