Click here to switch to the map view.

The map label for this gene is nusB

Identifier: 110633492

GI number: 110633492

Start: 1245888

End: 1246391

Strand: Direct

Name: nusB

Synonym: Meso_1139

Alternate gene names: 110633492

Gene position: 1245888-1246391 (Clockwise)

Preceding gene: 110633491

Following gene: 110633493

Centisome position: 28.24

GC content: 59.92

Gene sequence:

>504_bases
TTGACCACCCCCTCTAAAAGCCCTGCCGAAAACTTCCGCCCCGCCAACAAGCGCGGCGCCGCACGACTTGCTGCGGTGCA
GGCGCTTTATCAAATGGATGTTGCGGGCACCGGTCTCCTCGAGACCACAGCCGAATATGAGGCTTTCCGGCTCGGCAAGG
AGATCGACGGTGATCTCTACCGGGAAGCAGACGCGCAATGGTTCCGCGCGATCCTGTCCGGCGTCATCGAGAATCAGACC
TTTATCGATCCGGTCATTCGCCAGTCGCTGACGGAGGATTGGCCGCTCTCACGCCTCGATTCGACGCTGCGTGCGATCCT
GCGGGCCGGCGTCTATGAACTTTCAAAGCGCTCCGACGTGCCTGTCCCCGTCGTTGTCTCTGAATATATCGATATAGCCA
AGGCATTCTACGGCGAGGAGGAAGAGCCTAAGCTGGTGAATGCCGTTCTCGACCGTGTGGCACGTCGGATGCGTGGCGAG
GGCAAGGGCAAGGATCCTTCGTGA

Upstream 100 bases:

>100_bases
TCCCGAGACCGGGACAATCGAAGGAGCCGGGAAGGGGCGTGCGGCCGCCGAGGCCGCGCTTCGAATGATTGAACTCAAGA
AACGCCTTGGAGCGTGAACC

Downstream 100 bases:

>100_bases
CGGCTGAAGCGCTTTATCGTGAGGCGAAACGCACCGCGCTGATTCTCGCGGCTGCACAAGCGGTCGTCGGTGCGTCGGCA
CCCATAGCGATATCCATGGG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MTTPSKSPAENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDLYREADAQWFRAILSGVIENQT
FIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDVPVPVVVSEYIDIAKAFYGEEEEPKLVNAVLDRVARRMRGE
GKGKDPS

Sequences:

>Translated_167_residues
MTTPSKSPAENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDLYREADAQWFRAILSGVIENQT
FIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDVPVPVVVSEYIDIAKAFYGEEEEPKLVNAVLDRVARRMRGE
GKGKDPS
>Mature_166_residues
TTPSKSPAENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDLYREADAQWFRAILSGVIENQTF
IDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDVPVPVVVSEYIDIAKAFYGEEEEPKLVNAVLDRVARRMRGEG
KGKDPS

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=139, Percent_Identity=35.2517985611511, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_MESSB (Q11J90)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_673700.1
- ProteinModelPortal:   Q11J90
- SMR:   Q11J90
- STRING:   Q11J90
- GeneID:   4182547
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_1139
- NMPDR:   fig|266779.1.peg.2447
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   AFFRDIV
- PhylomeDB:   Q11J90
- ProtClustDB:   PRK00202
- BioCyc:   MSP266779:MESO_1139-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 18590; Mature: 18459

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPSKSPAENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDLY
CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHCHHHH
READAQWFRAILSGVIENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PVPVVVSEYIDIAKAFYGEEEEPKLVNAVLDRVARRMRGEGKGKDPS
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TTPSKSPAENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDLY
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHCHHHH
READAQWFRAILSGVIENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PVPVVVSEYIDIAKAFYGEEEEPKLVNAVLDRVARRMRGEGKGKDPS
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA