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The map label for this gene is ycbB [H]

Identifier: 110633486

GI number: 110633486

Start: 1240359

End: 1241618

Strand: Direct

Name: ycbB [H]

Synonym: Meso_1133

Alternate gene names: 110633486

Gene position: 1240359-1241618 (Clockwise)

Preceding gene: 110633485

Following gene: 110633487

Centisome position: 28.11

GC content: 60.16

Gene sequence:

>1260_bases
ATGAAGACCAGTCGCCGTATTTTCCTTGGTGGAGCGGGCGCTGCTGCTGCGGCGGCCTTCACGGGTGCTGCCAAGGCGCA
GAACGCGTTCGATGCCATTATCAACGCTCCCCGCCGAGGTGTTTGGGACGATCAGTTCGACGCCCAGATCAGCAGCGGCA
GGGATAGGGTCATCTCCTATCTCCCGGTTCTAAACCCGCAGACCGCGGTTCACGTCGAGCAGGCAATAGCCGGCTATTCC
AACATCGTGGCAAGCGGCGGCTGGCCGCAGGTGCCGGCGACGAAGAAGCTGCAACTCGGTGTCATCGATCCTGATGTGGA
GGCGCTTCGCCGCCGCCTGATGGTATCTGGGGATCTTTCGCCGCGGGCAGGCATGTCTCCCGCCTTCGATTCTTATGTTG
ATCAAGCCTTGAAGCGTTTTCAGGTTCGCCATGGCCTTCCCGCCGATGGCGTGACCGGGCGTTACACCTTCTCGGCGCTC
AATGTTTCAGCGCCGGTCAGGCTTGGCCAACTCCAGACCAATCTTGGCCGCCTGCGCGAGATGACCTCGAAGCAGCTCGG
AAACCGCTTCGTGATGGTCAACATCCCGGCTGCGCAGATTGAGGCGGTCGAGAATGGCCGGGTGGTATCGCGGCATACGG
CCGTTGTCGGTAAGATCGATCGGCAGACGCCGGTCCTCAGCTCCAAGATCAACGAGATCATCCTCAATCCATATTGGAAC
GCGCCGGTCTCGATCGTGCGTAAGGACATCATTCCGCTGATGCGGAAGGATCCCAATTATCTCACCGACAACAATATCCG
CATGATCGCGCCGGACGGTAGCGAAGTCGATCCGCTGACGATTGATTGGTCGACGGAAGAAGCCGCCAAGTACCGTTTCC
GCCAGGATCCCGGCAAGATCAATGCCATGGCTTCGGTGAAGATCAATTTCCCGAACCAGCATGCGGTTTACATGCACGAC
ACGCCGCAGCAGAGCCTGTTCCGCGATCAGGAGCGCTTCCATTCCTCCGGCTGCGTGCGGGTCCAGAACGTCCGCGATCT
TGTGGCTTGGCTGCTGCGCGACACGCAAGGCTGGGACCGCCGGCGCATCGAGACCACGATTCAGAGCCAGGAAGACATTC
ACATCAACGTGGCGGACCCGGTGCCGGTGTACTTCGTCTACGTCTCCGCCTGGTCGACCGGCGACGGCGTCGTCCACTTC
CGCGACGACATCTACGGTTTTGATGGTGCGGAGGAATTGCAGATTTCCACCGCGATCTGA

Upstream 100 bases:

>100_bases
AATCCCGCGGAGCGACAAACTGCAATCTATTGGCGAAAAATTAACCCTGTGTCGGCGAGTTTCGGCTGCAGGCCATAGCC
CTGAGTGTAAAGGATCGGAG

Downstream 100 bases:

>100_bases
CGGCGAAGCACCAGCAATACCCTCAAGAAGACCGCCTTGATGGCGGTCTTTTTTTGTGCGTCCCGCAGGGGGCTTGCCGC
AACATTTGGCCCACCTGCAA

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MKTSRRIFLGGAGAAAAAAFTGAAKAQNAFDAIINAPRRGVWDDQFDAQISSGRDRVISYLPVLNPQTAVHVEQAIAGYS
NIVASGGWPQVPATKKLQLGVIDPDVEALRRRLMVSGDLSPRAGMSPAFDSYVDQALKRFQVRHGLPADGVTGRYTFSAL
NVSAPVRLGQLQTNLGRLREMTSKQLGNRFVMVNIPAAQIEAVENGRVVSRHTAVVGKIDRQTPVLSSKINEIILNPYWN
APVSIVRKDIIPLMRKDPNYLTDNNIRMIAPDGSEVDPLTIDWSTEEAAKYRFRQDPGKINAMASVKINFPNQHAVYMHD
TPQQSLFRDQERFHSSGCVRVQNVRDLVAWLLRDTQGWDRRRIETTIQSQEDIHINVADPVPVYFVYVSAWSTGDGVVHF
RDDIYGFDGAEELQISTAI

Sequences:

>Translated_419_residues
MKTSRRIFLGGAGAAAAAAFTGAAKAQNAFDAIINAPRRGVWDDQFDAQISSGRDRVISYLPVLNPQTAVHVEQAIAGYS
NIVASGGWPQVPATKKLQLGVIDPDVEALRRRLMVSGDLSPRAGMSPAFDSYVDQALKRFQVRHGLPADGVTGRYTFSAL
NVSAPVRLGQLQTNLGRLREMTSKQLGNRFVMVNIPAAQIEAVENGRVVSRHTAVVGKIDRQTPVLSSKINEIILNPYWN
APVSIVRKDIIPLMRKDPNYLTDNNIRMIAPDGSEVDPLTIDWSTEEAAKYRFRQDPGKINAMASVKINFPNQHAVYMHD
TPQQSLFRDQERFHSSGCVRVQNVRDLVAWLLRDTQGWDRRRIETTIQSQEDIHINVADPVPVYFVYVSAWSTGDGVVHF
RDDIYGFDGAEELQISTAI
>Mature_419_residues
MKTSRRIFLGGAGAAAAAAFTGAAKAQNAFDAIINAPRRGVWDDQFDAQISSGRDRVISYLPVLNPQTAVHVEQAIAGYS
NIVASGGWPQVPATKKLQLGVIDPDVEALRRRLMVSGDLSPRAGMSPAFDSYVDQALKRFQVRHGLPADGVTGRYTFSAL
NVSAPVRLGQLQTNLGRLREMTSKQLGNRFVMVNIPAAQIEAVENGRVVSRHTAVVGKIDRQTPVLSSKINEIILNPYWN
APVSIVRKDIIPLMRKDPNYLTDNNIRMIAPDGSEVDPLTIDWSTEEAAKYRFRQDPGKINAMASVKINFPNQHAVYMHD
TPQQSLFRDQERFHSSGCVRVQNVRDLVAWLLRDTQGWDRRRIETTIQSQEDIHINVADPVPVYFVYVSAWSTGDGVVHF
RDDIYGFDGAEELQISTAI

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=406, Percent_Identity=32.2660098522167, Blast_Score=214, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 46478; Mature: 46478

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSRRIFLGGAGAAAAAAFTGAAKAQNAFDAIINAPRRGVWDDQFDAQISSGRDRVISY
CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHH
LPVLNPQTAVHVEQAIAGYSNIVASGGWPQVPATKKLQLGVIDPDVEALRRRLMVSGDLS
HCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHEECCCCC
PRAGMSPAFDSYVDQALKRFQVRHGLPADGVTGRYTFSALNVSAPVRLGQLQTNLGRLRE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHH
MTSKQLGNRFVMVNIPAAQIEAVENGRVVSRHTAVVGKIDRQTPVLSSKINEIILNPYWN
HHHHHHCCEEEEEECCHHHHHHCCCCEEEEEHHEEEECCCCCCCHHHHHHHHEEECCCCC
APVSIVRKDIIPLMRKDPNYLTDNNIRMIAPDGSEVDPLTIDWSTEEAAKYRFRQDPGKI
CHHHHHHHHHHHHHCCCCCEECCCCEEEECCCCCCCCCEEEECCCHHHHHHHHCCCCCCE
NAMASVKINFPNQHAVYMHDTPQQSLFRDQERFHSSGCVRVQNVRDLVAWLLRDTQGWDR
EEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCH
RRIETTIQSQEDIHINVADPVPVYFVYVSAWSTGDGVVHFRDDIYGFDGAEELQISTAI
HHHHHHHCCCCCEEEEECCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MKTSRRIFLGGAGAAAAAAFTGAAKAQNAFDAIINAPRRGVWDDQFDAQISSGRDRVISY
CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHH
LPVLNPQTAVHVEQAIAGYSNIVASGGWPQVPATKKLQLGVIDPDVEALRRRLMVSGDLS
HCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHEECCCCC
PRAGMSPAFDSYVDQALKRFQVRHGLPADGVTGRYTFSALNVSAPVRLGQLQTNLGRLRE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHH
MTSKQLGNRFVMVNIPAAQIEAVENGRVVSRHTAVVGKIDRQTPVLSSKINEIILNPYWN
HHHHHHCCEEEEEECCHHHHHHCCCCEEEEEHHEEEECCCCCCCHHHHHHHHEEECCCCC
APVSIVRKDIIPLMRKDPNYLTDNNIRMIAPDGSEVDPLTIDWSTEEAAKYRFRQDPGKI
CHHHHHHHHHHHHHCCCCCEECCCCEEEECCCCCCCCCEEEECCCHHHHHHHHCCCCCCE
NAMASVKINFPNQHAVYMHDTPQQSLFRDQERFHSSGCVRVQNVRDLVAWLLRDTQGWDR
EEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCH
RRIETTIQSQEDIHINVADPVPVYFVYVSAWSTGDGVVHFRDDIYGFDGAEELQISTAI
HHHHHHHCCCCCEEEEECCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]