| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is oppD [H]
Identifier: 110633354
GI number: 110633354
Start: 1097132
End: 1098187
Strand: Reverse
Name: oppD [H]
Synonym: Meso_1000
Alternate gene names: 110633354
Gene position: 1098187-1097132 (Counterclockwise)
Preceding gene: 110633355
Following gene: 110633353
Centisome position: 24.89
GC content: 63.45
Gene sequence:
>1056_bases ATGGGCGTCGCTCGCGATGGGCCTGCAAACCGCGGAAGAGGCATGAGCACGCAAACACCTAACCTCGTGGAACTGCGGGA TCTGAAAGTGGCCTTCGATGGCGTTCAGGTCCTGCACGGGATCAATCTCGACGTGGCGCATGGAGACGCGCTTGGCCTTG TCGGGGAGTCGGGCTGTGGCAAATCCGTAACCTGGCTGGCGGCCCTTGGCCTGCTGCCGGGCAAAGCCAGCGTCACCGGC TCCGTTCGTCTTGGAGGAATGGAACTTTCCACCGCGCCACGGCCGGTCCTTGAGAAAGTGCGCGGCAAGCGGATTGCGAT GATATTTCAGGATCCGTCGAGCTCGCTCAATCCGGTCCTGCGCATCGGCCGGCAGATAACGGAGGCGCTTGCCATCCATC GCGGCCTGACCGGCGAGGCTGCCAGAGCCGAAGCGCTGCGTCTGATGGATATGGTGGGTATCCCCGATCCCAGGCGCCGT TTCGATCAGTATTCGCATGAGTTTTCGGGCGGGCAGTGCCAGCGCTTGATGATCGCCATCGCGCTTGCCGGCGAGCCCGA TCTCTTGATTGCCGACGAGCCCACGACGGCGCTCGATGCGACTATCCAGGCGCAGATCCTCGACCTACTGGCAGAACTGA AGAGGGAGACCGGCATGGCGCTGGTTTTCATCAGCCACGATCTCGGTGCGGTCTCTCAGGTTTGTGAGAGCGTCTGCGTG ATGTATGCCGGCCGCATCGTCGAACAGGGCACGGTCGATCAGCTGTTTTCCGAACCCCGGCACCCCTATACGCGGGGCCT GTTCGACGCCATTCCCCGCCTCCACGGTACTCGCGAAAGGCTGATCCCCATTCCCGGCACGGTGCCGAACCCGAGGGAGC TGCCGCGCGGCTGTGCGTTCTCGCCGCGCTGCCCCAAGGCGAGCAACTTCTGCCACACAAACAGCCCGCGGCTGCTTCTT CAGCCCGACGGAAGCAGCCTTGCCTGCGTGCATCCAGTCGAGGTCGCCGGAACCGGCGCGGGCAAGGCCCGCATTTTCGA AGAAGTGATGCAATGA
Upstream 100 bases:
>100_bases TTCGCAATGGACTTCCGCAGTTCCAACTGGACGAGCTGAACGCCACAGGCAGGCTCCGGCGCTTCGGCCGCCGGAGCCAA GCTCTTTTCCAATAGCGTCC
Downstream 100 bases:
>100_bases TACCTTTGATCGAGGCGAGAGGGCTCGTCCGCATCTATGAGATTCGCAAGGGGCCCTTCAGCCGCCCGCAACCGGTGCGC GCCGTCGACGACCTTTCCCT
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MGVARDGPANRGRGMSTQTPNLVELRDLKVAFDGVQVLHGINLDVAHGDALGLVGESGCGKSVTWLAALGLLPGKASVTG SVRLGGMELSTAPRPVLEKVRGKRIAMIFQDPSSSLNPVLRIGRQITEALAIHRGLTGEAARAEALRLMDMVGIPDPRRR FDQYSHEFSGGQCQRLMIAIALAGEPDLLIADEPTTALDATIQAQILDLLAELKRETGMALVFISHDLGAVSQVCESVCV MYAGRIVEQGTVDQLFSEPRHPYTRGLFDAIPRLHGTRERLIPIPGTVPNPRELPRGCAFSPRCPKASNFCHTNSPRLLL QPDGSSLACVHPVEVAGTGAGKARIFEEVMQ
Sequences:
>Translated_351_residues MGVARDGPANRGRGMSTQTPNLVELRDLKVAFDGVQVLHGINLDVAHGDALGLVGESGCGKSVTWLAALGLLPGKASVTG SVRLGGMELSTAPRPVLEKVRGKRIAMIFQDPSSSLNPVLRIGRQITEALAIHRGLTGEAARAEALRLMDMVGIPDPRRR FDQYSHEFSGGQCQRLMIAIALAGEPDLLIADEPTTALDATIQAQILDLLAELKRETGMALVFISHDLGAVSQVCESVCV MYAGRIVEQGTVDQLFSEPRHPYTRGLFDAIPRLHGTRERLIPIPGTVPNPRELPRGCAFSPRCPKASNFCHTNSPRLLL QPDGSSLACVHPVEVAGTGAGKARIFEEVMQ >Mature_350_residues GVARDGPANRGRGMSTQTPNLVELRDLKVAFDGVQVLHGINLDVAHGDALGLVGESGCGKSVTWLAALGLLPGKASVTGS VRLGGMELSTAPRPVLEKVRGKRIAMIFQDPSSSLNPVLRIGRQITEALAIHRGLTGEAARAEALRLMDMVGIPDPRRRF DQYSHEFSGGQCQRLMIAIALAGEPDLLIADEPTTALDATIQAQILDLLAELKRETGMALVFISHDLGAVSQVCESVCVM YAGRIVEQGTVDQLFSEPRHPYTRGLFDAIPRLHGTRERLIPIPGTVPNPRELPRGCAFSPRCPKASNFCHTNSPRLLLQ PDGSSLACVHPVEVAGTGAGKARIFEEVMQ
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=246, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=9e-15, Organism=Homo sapiens, GI9961252, Length=264, Percent_Identity=27.6515151515151, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI9961250, Length=264, Percent_Identity=27.6515151515151, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI4505771, Length=264, Percent_Identity=27.6515151515151, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI9665248, Length=249, Percent_Identity=28.5140562248996, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI105990541, Length=211, Percent_Identity=24.6445497630332, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI48994883, Length=321, Percent_Identity=46.7289719626168, Blast_Score=298, Evalue=3e-82, Organism=Escherichia coli, GI1789963, Length=299, Percent_Identity=45.819397993311, Blast_Score=275, Evalue=5e-75, Organism=Escherichia coli, GI1787759, Length=322, Percent_Identity=43.7888198757764, Blast_Score=250, Evalue=1e-67, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=46.5384615384615, Blast_Score=224, Evalue=8e-60, Organism=Escherichia coli, GI145693107, Length=268, Percent_Identity=44.0298507462687, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI1789962, Length=287, Percent_Identity=42.1602787456446, Blast_Score=222, Evalue=4e-59, Organism=Escherichia coli, GI1787500, Length=315, Percent_Identity=41.9047619047619, Blast_Score=211, Evalue=5e-56, Organism=Escherichia coli, GI1787758, Length=325, Percent_Identity=38.4615384615385, Blast_Score=202, Evalue=2e-53, Organism=Escherichia coli, GI1787548, Length=310, Percent_Identity=35.8064516129032, Blast_Score=194, Evalue=1e-50, Organism=Escherichia coli, GI1789890, Length=259, Percent_Identity=38.6100386100386, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI1786398, Length=266, Percent_Identity=32.7067669172932, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=30.6513409961686, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1788225, Length=252, Percent_Identity=32.1428571428571, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI48994997, Length=237, Percent_Identity=35.0210970464135, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1788761, Length=264, Percent_Identity=29.9242424242424, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789891, Length=216, Percent_Identity=34.7222222222222, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787370, Length=259, Percent_Identity=28.5714285714286, Blast_Score=111, Evalue=7e-26, Organism=Escherichia coli, GI1787089, Length=240, Percent_Identity=34.1666666666667, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=31.9327731092437, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=35.1931330472103, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1789032, Length=227, Percent_Identity=32.15859030837, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=30.3149606299213, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1790162, Length=264, Percent_Identity=27.6515151515151, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI87081709, Length=241, Percent_Identity=29.045643153527, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1788644, Length=252, Percent_Identity=32.5396825396825, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081791, Length=275, Percent_Identity=27.6363636363636, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786872, Length=250, Percent_Identity=30.4, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1787105, Length=235, Percent_Identity=33.1914893617021, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790467, Length=254, Percent_Identity=27.1653543307087, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1788450, Length=249, Percent_Identity=28.5140562248996, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786319, Length=276, Percent_Identity=30.0724637681159, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=26.9387755102041, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786803, Length=288, Percent_Identity=28.125, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87081834, Length=192, Percent_Identity=34.375, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI87082267, Length=242, Percent_Identity=30.9917355371901, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790544, Length=271, Percent_Identity=26.5682656826568, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786563, Length=233, Percent_Identity=31.7596566523605, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786345, Length=244, Percent_Identity=28.2786885245902, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789586, Length=258, Percent_Identity=27.906976744186, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787112, Length=256, Percent_Identity=29.6875, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=28.8702928870293, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790190, Length=259, Percent_Identity=27.7992277992278, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1789593, Length=234, Percent_Identity=26.0683760683761, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786654, Length=261, Percent_Identity=32.183908045977, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789873, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789991, Length=234, Percent_Identity=27.3504273504274, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788210, Length=242, Percent_Identity=28.099173553719, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786253, Length=222, Percent_Identity=28.8288288288288, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=30.4147465437788, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI87081782, Length=235, Percent_Identity=25.1063829787234, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1788053, Length=196, Percent_Identity=28.0612244897959, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790525, Length=279, Percent_Identity=25.4480286738351, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI48995001, Length=237, Percent_Identity=26.5822784810127, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1790534, Length=203, Percent_Identity=30.5418719211823, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787792, Length=235, Percent_Identity=26.8085106382979, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193209708, Length=302, Percent_Identity=26.8211920529801, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI25146777, Length=245, Percent_Identity=27.7551020408163, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI71983516, Length=255, Percent_Identity=26.2745098039216, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71983510, Length=255, Percent_Identity=26.2745098039216, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71983523, Length=312, Percent_Identity=24.6794871794872, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17558664, Length=253, Percent_Identity=30.4347826086957, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193202349, Length=229, Percent_Identity=29.6943231441048, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193211017, Length=259, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193211015, Length=259, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71996809, Length=259, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71984940, Length=240, Percent_Identity=28.3333333333333, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17541710, Length=233, Percent_Identity=31.7596566523605, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=269, Percent_Identity=28.996282527881, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115535101, Length=249, Percent_Identity=28.5140562248996, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=233, Percent_Identity=28.755364806867, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=248, Percent_Identity=26.6129032258064, Blast_Score=77, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6322640, Length=247, Percent_Identity=29.1497975708502, Blast_Score=70, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6319856, Length=230, Percent_Identity=26.5217391304348, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582014, Length=200, Percent_Identity=32, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24582012, Length=200, Percent_Identity=32, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24643674, Length=229, Percent_Identity=23.1441048034935, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363262, Length=231, Percent_Identity=29.8701298701299, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI24653245, Length=231, Percent_Identity=29.8701298701299, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI85726357, Length=264, Percent_Identity=26.8939393939394, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI221512771, Length=232, Percent_Identity=24.5689655172414, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI17136662, Length=249, Percent_Identity=30.1204819277108, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI28574533, Length=220, Percent_Identity=27.7272727272727, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI19920532, Length=227, Percent_Identity=27.3127753303965, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580930, Length=227, Percent_Identity=27.3127753303965, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641565, Length=251, Percent_Identity=30.6772908366534, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI85725262, Length=226, Percent_Identity=24.7787610619469, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 37626; Mature: 37495
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVARDGPANRGRGMSTQTPNLVELRDLKVAFDGVQVLHGINLDVAHGDALGLVGESGCG CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCC KSVTWLAALGLLPGKASVTGSVRLGGMELSTAPRPVLEKVRGKRIAMIFQDPSSSLNPVL CHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCHHHHHHHCCCEEEEEEECCCCCHHHHH RIGRQITEALAIHRGLTGEAARAEALRLMDMVGIPDPRRRFDQYSHEFSGGQCQRLMIAI HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHEEEEEEE ALAGEPDLLIADEPTTALDATIQAQILDLLAELKRETGMALVFISHDLGAVSQVCESVCV EECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHH MYAGRIVEQGTVDQLFSEPRHPYTRGLFDAIPRLHGTRERLIPIPGTVPNPRELPRGCAF HHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCCCCC SPRCPKASNFCHTNSPRLLLQPDGSSLACVHPVEVAGTGAGKARIFEEVMQ CCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCEECCCCCCHHHHHHHHHC >Mature Secondary Structure GVARDGPANRGRGMSTQTPNLVELRDLKVAFDGVQVLHGINLDVAHGDALGLVGESGCG CCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCC KSVTWLAALGLLPGKASVTGSVRLGGMELSTAPRPVLEKVRGKRIAMIFQDPSSSLNPVL CHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCHHHHHHHCCCEEEEEEECCCCCHHHHH RIGRQITEALAIHRGLTGEAARAEALRLMDMVGIPDPRRRFDQYSHEFSGGQCQRLMIAI HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHEEEEEEE ALAGEPDLLIADEPTTALDATIQAQILDLLAELKRETGMALVFISHDLGAVSQVCESVCV EECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHH MYAGRIVEQGTVDQLFSEPRHPYTRGLFDAIPRLHGTRERLIPIPGTVPNPRELPRGCAF HHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCCCCC SPRCPKASNFCHTNSPRLLLQPDGSSLACVHPVEVAGTGAGKARIFEEVMQ CCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCEECCCCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]