BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

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The map label for this gene is yciK [H]

Identifier: 110633335

GI number: 110633335

Start: 1076968

End: 1077714

Strand: Reverse

Name: yciK [H]

Synonym: Meso_0981

Alternate gene names: 110633335

Gene position: 1077714-1076968 (Counterclockwise)

Preceding gene: 110633337

Following gene: 110633334

Centisome position: 24.42

GC content: 63.86

Gene sequence:

>747_bases
ATGCCCAATTCAATGGACCTCAGCGGACGCATCGCCCTCGTTACCGGCGCCTCCCGCGGCATCGGCTATTTCCTCGCCAA
GGGGCTGGCGGCCGCCGGCGCCCATGTGATCGCCGTTGCCCGCACTGTCGGCGGTCTGGAAGAGCTGGATGACGAGATCA
AGGCGGCGGGAGGTCAGGCGACCCTTGTGCCTCTCGACTTAACCGACATGCCGGCGATCGATCGTCTCGGCGGCGCAATC
CACGAGCGCTGGGGCAAGCTGGACATTCTGGTGGCCAATGCGGGTATCCTCGGCGTGATCTCACCCATCGGCCATGTGGA
GGCCAAGACGTTCGAAAAGGTGATGGCGGTCAACGTCACCTCAACCTGGCGGCTCATCCGCTCCGTCGACCCGCTGCTGA
GAGCTTCGGATGCCGGGCGCGCCATTGTCATGTCTTCAGGCGCTGCGCATTCCGCGCGCGCATTTTGGGGGCCTTACGCG
GCCTCTAAAGCCGCCGTGGAGGCGCTGGTGCGCTCGTGGGCGGATGAAACGAAAAACATGCCAATTCGTGTCAATGCGGT
AGATCCGGGCGCCACGCGCACCGCCATGCGCGCTCAGGCGATGCCCGGCGAGGACCCCGACACCTTGCCCCATCCGCGCG
ACGTGGCGGAAAAGATCCTGCCGCTGGCAAGCCCGTCTATTACAGAAACCGGGCTCATCTATAACGTGCGTCTCGGGCGC
TTTACACGTTATAGTATGCCCGAATAG

Upstream 100 bases:

>100_bases
ATATAAAGGTACCGGCCGGTGGCCGCAACACGGACCAGCGGGTTTCCCCCCGGCGCAATTCATACTAATACCGGCCCAAA
GCACTCTCAGGGAAAGACGC

Downstream 100 bases:

>100_bases
CATCCACGGATCGGATTGACCTTGTCTGTCCTTCCGCTACCCTGCTCGCAAGTGGTCAGAAGAAGCCATTTAAGGACTGT
ATTGCATCGGCGACGGTCCC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MPNSMDLSGRIALVTGASRGIGYFLAKGLAAAGAHVIAVARTVGGLEELDDEIKAAGGQATLVPLDLTDMPAIDRLGGAI
HERWGKLDILVANAGILGVISPIGHVEAKTFEKVMAVNVTSTWRLIRSVDPLLRASDAGRAIVMSSGAAHSARAFWGPYA
ASKAAVEALVRSWADETKNMPIRVNAVDPGATRTAMRAQAMPGEDPDTLPHPRDVAEKILPLASPSITETGLIYNVRLGR
FTRYSMPE

Sequences:

>Translated_248_residues
MPNSMDLSGRIALVTGASRGIGYFLAKGLAAAGAHVIAVARTVGGLEELDDEIKAAGGQATLVPLDLTDMPAIDRLGGAI
HERWGKLDILVANAGILGVISPIGHVEAKTFEKVMAVNVTSTWRLIRSVDPLLRASDAGRAIVMSSGAAHSARAFWGPYA
ASKAAVEALVRSWADETKNMPIRVNAVDPGATRTAMRAQAMPGEDPDTLPHPRDVAEKILPLASPSITETGLIYNVRLGR
FTRYSMPE
>Mature_247_residues
PNSMDLSGRIALVTGASRGIGYFLAKGLAAAGAHVIAVARTVGGLEELDDEIKAAGGQATLVPLDLTDMPAIDRLGGAIH
ERWGKLDILVANAGILGVISPIGHVEAKTFEKVMAVNVTSTWRLIRSVDPLLRASDAGRAIVMSSGAAHSARAFWGPYAA
SKAAVEALVRSWADETKNMPIRVNAVDPGATRTAMRAQAMPGEDPDTLPHPRDVAEKILPLASPSITETGLIYNVRLGRF
TRYSMPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=218, Percent_Identity=30.2752293577982, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=28.9473684210526, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=31.9838056680162, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI20149619, Length=207, Percent_Identity=30.9178743961353, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI5031737, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7705925, Length=191, Percent_Identity=34.0314136125654, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=27.5132275132275, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4557649, Length=201, Percent_Identity=28.8557213930348, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI32455239, Length=211, Percent_Identity=30.3317535545024, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI5031765, Length=211, Percent_Identity=30.3317535545024, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI19923817, Length=201, Percent_Identity=27.363184079602, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI19743808, Length=196, Percent_Identity=30.1020408163265, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI223718074, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7706318, Length=219, Percent_Identity=26.4840182648402, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI31542939, Length=243, Percent_Identity=28.8065843621399, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787526, Length=238, Percent_Identity=39.0756302521008, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1790717, Length=196, Percent_Identity=32.6530612244898, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=34.375, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082100, Length=209, Percent_Identity=33.4928229665072, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787905, Length=233, Percent_Identity=32.618025751073, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082160, Length=239, Percent_Identity=28.0334728033473, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI2367175, Length=193, Percent_Identity=34.1968911917098, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786812, Length=238, Percent_Identity=27.3109243697479, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789378, Length=210, Percent_Identity=33.8095238095238, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787820, Length=218, Percent_Identity=26.605504587156, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789208, Length=235, Percent_Identity=26.8085106382979, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788459, Length=207, Percent_Identity=28.0193236714976, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=206, Percent_Identity=31.5533980582524, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=224, Percent_Identity=31.6964285714286, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=193, Percent_Identity=30.5699481865285, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=31.1557788944724, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=206, Percent_Identity=33.0097087378641, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=207, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=246, Percent_Identity=30.4878048780488, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=198, Percent_Identity=33.8383838383838, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=203, Percent_Identity=31.5270935960591, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=205, Percent_Identity=30.7317073170732, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17557780, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=32.48730964467, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=30.6201550387597, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=249, Percent_Identity=28.1124497991968, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=208, Percent_Identity=31.25, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=211, Percent_Identity=27.4881516587678, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=202, Percent_Identity=31.1881188118812, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=240, Percent_Identity=31.25, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=167, Percent_Identity=28.7425149700599, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=257, Percent_Identity=26.8482490272374, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=217, Percent_Identity=29.4930875576037, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=198, Percent_Identity=26.7676767676768, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=227, Percent_Identity=27.7533039647577, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=210, Percent_Identity=27.6190476190476, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=192, Percent_Identity=31.7708333333333, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=241, Percent_Identity=27.3858921161826, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=239, Percent_Identity=28.0334728033473, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=34.1836734693878, Blast_Score=91, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6322861, Length=256, Percent_Identity=28.125, Blast_Score=82, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6322226, Length=203, Percent_Identity=29.064039408867, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643142, Length=198, Percent_Identity=38.3838383838384, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21355319, Length=201, Percent_Identity=28.3582089552239, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571526, Length=205, Percent_Identity=34.1463414634146, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=200, Percent_Identity=33, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644339, Length=219, Percent_Identity=30.5936073059361, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=36.0824742268041, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=30.6930693069307, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21356301, Length=245, Percent_Identity=27.3469387755102, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI281364892, Length=226, Percent_Identity=27.8761061946903, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=24.8730964467005, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=235, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648944, Length=230, Percent_Identity=28.695652173913, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357673, Length=211, Percent_Identity=27.9620853080569, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007238, Length=228, Percent_Identity=23.2456140350877, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26184; Mature: 26053

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNSMDLSGRIALVTGASRGIGYFLAKGLAAAGAHVIAVARTVGGLEELDDEIKAAGGQA
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCE
TLVPLDLTDMPAIDRLGGAIHERWGKLDILVANAGILGVISPIGHVEAKTFEKVMAVNVT
EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHHHCCCH
STWRLIRSVDPLLRASDAGRAIVMSSGAAHSARAFWGPYAASKAAVEALVRSWADETKNM
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCC
PIRVNAVDPGATRTAMRAQAMPGEDPDTLPHPRDVAEKILPLASPSITETGLIYNVRLGR
CEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECC
FTRYSMPE
EECCCCCC
>Mature Secondary Structure 
PNSMDLSGRIALVTGASRGIGYFLAKGLAAAGAHVIAVARTVGGLEELDDEIKAAGGQA
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCE
TLVPLDLTDMPAIDRLGGAIHERWGKLDILVANAGILGVISPIGHVEAKTFEKVMAVNVT
EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHHHCCCH
STWRLIRSVDPLLRASDAGRAIVMSSGAAHSARAFWGPYAASKAAVEALVRSWADETKNM
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCC
PIRVNAVDPGATRTAMRAQAMPGEDPDTLPHPRDVAEKILPLASPSITETGLIYNVRLGR
CEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECC
FTRYSMPE
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]