Click here to switch to the map view.

The map label for this gene is ygfZ [C]

Identifier: 110633313

GI number: 110633313

Start: 1056870

End: 1057736

Strand: Reverse

Name: ygfZ [C]

Synonym: Meso_0959

Alternate gene names: 110633313

Gene position: 1057736-1056870 (Counterclockwise)

Preceding gene: 110633314

Following gene: 110633312

Centisome position: 23.97

GC content: 62.28

Gene sequence:

>867_bases
ATGCCGAGTGTTGAGCTTTCCGACCGCACCGTTCTCCTTGCCGCCGGGCCGGATGCCGAGGCGCTGCTGCAGAATATCAT
AACCACCGACCTTTCCGCGCTCGGACAAGACGAAGCGCGGCCCGGTGCGCTGCTGACGCCGCAGGGAAAAATCCTTTTCG
ATTTCCTGATCTCGCGCACCGGACAGGACGGGTTCCGTCTCGACTGCCGCAGCGATCTGGCGCAGGATTTTCTGAAGCGC
CTGATGTTGTACCGGCTGCGGGCAAAGGCGGAATTATCCATCGATAACAATGCGGTTATCTCCGTTTCCTGGGGAAATGA
TTCACTAAGCTCACAAACTGATTCAATGTCCGTCGTGGACCGGCGCTTTCCAGAAGCGCTGAAGGTTGCGCGCCGCTATG
GCAGTGCTGATGAGGGAAGCGCCGACATCTCCGCGTGGGACCGTCTGCGCGTCGAACACGGAGTTGCGGAAAGCGGCAGG
GATTACGATCTTGGGGATGCTTTCCCCCATGAAATCCTCTTCGACCAGAACGGCGGCGTAGGACTCAAGAAGGGCTGCTA
TGTGGGACAGGAGGTCGTCTCGCGCATGCATCACCGCGGCACGGCGCGCAGGCGACTTGTGATCGTGCGAGGTGACAAGG
CCCTGCCCGCTTCCGGCAGCCAGATCACAGCGGATGGCCGCGCAATCGGCGCGCTCGGCACCGTTTGCGACGCCGACGGG
CTGGCGATCCTGCGCATCGACCGCGCGGCGGAGGCCATTCAGGCAGGCAATCCAATCCTCGCGGGCGAGGCCGCGCTTTC
GCTGAAAGTGCCGGCTTTCGCGAAGTTCACCATTTCCGTTCCCGATGGCCCGGCGGAGACCGCCTGA

Upstream 100 bases:

>100_bases
GCTGGCTGTTCTTCGTGGCTGGAGACTGATACGGGTCCGCTTGCTCCGCACGCCAGGGAGGCTTACGTAGCAGAAAGCCG
CCGAGACCGGATTCGATGCC

Downstream 100 bases:

>100_bases
TGGCGGGCCAGACCGCCGCGCGCGCCTGGCAGCGCATGCTCTCGGGCCGCAGGCTCGATCTCCTTGATCCCTCGCCGCTC
GACATAGAGATCGCGGACAT

Product: glycine cleavage T protein (aminomethyl transferase)

Products: NA

Alternate protein names: Aminomethyltransferase; Aminomethyl Transferase Family Protein; Glycine Cleavage T-Protein; Aminomethyltransferase Protein; Glycine Cleavage System T Protein Aminomethyltransferase; Aminomethyl Transferase; Aminomethyltransferase Family Protein; Aminomethyltransferase Related GcvT; Glycine Cleavage T-Protein Barrel; Glycine Cleavage T-Protein Superfamily Protein; Glycine Cleavage T-Protein C-Terminal Barrel; GcvT-Like Aminomethyltransferase Protein; GcvT-Like Aminomethyltransferase

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MPSVELSDRTVLLAAGPDAEALLQNIITTDLSALGQDEARPGALLTPQGKILFDFLISRTGQDGFRLDCRSDLAQDFLKR
LMLYRLRAKAELSIDNNAVISVSWGNDSLSSQTDSMSVVDRRFPEALKVARRYGSADEGSADISAWDRLRVEHGVAESGR
DYDLGDAFPHEILFDQNGGVGLKKGCYVGQEVVSRMHHRGTARRRLVIVRGDKALPASGSQITADGRAIGALGTVCDADG
LAILRIDRAAEAIQAGNPILAGEAALSLKVPAFAKFTISVPDGPAETA

Sequences:

>Translated_288_residues
MPSVELSDRTVLLAAGPDAEALLQNIITTDLSALGQDEARPGALLTPQGKILFDFLISRTGQDGFRLDCRSDLAQDFLKR
LMLYRLRAKAELSIDNNAVISVSWGNDSLSSQTDSMSVVDRRFPEALKVARRYGSADEGSADISAWDRLRVEHGVAESGR
DYDLGDAFPHEILFDQNGGVGLKKGCYVGQEVVSRMHHRGTARRRLVIVRGDKALPASGSQITADGRAIGALGTVCDADG
LAILRIDRAAEAIQAGNPILAGEAALSLKVPAFAKFTISVPDGPAETA
>Mature_287_residues
PSVELSDRTVLLAAGPDAEALLQNIITTDLSALGQDEARPGALLTPQGKILFDFLISRTGQDGFRLDCRSDLAQDFLKRL
MLYRLRAKAELSIDNNAVISVSWGNDSLSSQTDSMSVVDRRFPEALKVARRYGSADEGSADISAWDRLRVEHGVAESGRD
YDLGDAFPHEILFDQNGGVGLKKGCYVGQEVVSRMHHRGTARRRLVIVRGDKALPASGSQITADGRAIGALGTVCDADGL
AILRIDRAAEAIQAGNPILAGEAALSLKVPAFAKFTISVPDGPAETA

Specific function: Unknown

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI58197556, Length=275, Percent_Identity=30.5454545454545, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71985951, Length=206, Percent_Identity=30.5825242718447, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24645123, Length=271, Percent_Identity=25.830258302583, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30772; Mature: 30641

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSVELSDRTVLLAAGPDAEALLQNIITTDLSALGQDEARPGALLTPQGKILFDFLISRT
CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHCC
GQDGFRLDCRSDLAQDFLKRLMLYRLRAKAELSIDNNAVISVSWGNDSLSSQTDSMSVVD
CCCCEEECHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHH
RRFPEALKVARRYGSADEGSADISAWDRLRVEHGVAESGRDYDLGDAFPHEILFDQNGGV
HHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
GLKKGCYVGQEVVSRMHHRGTARRRLVIVRGDKALPASGSQITADGRAIGALGTVCDADG
CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHCEECCCC
LAILRIDRAAEAIQAGNPILAGEAALSLKVPAFAKFTISVPDGPAETA
EEEEEEHHHHHHHHCCCCEEECCCEEEEECCCEEEEEEECCCCCCCCC
>Mature Secondary Structure 
PSVELSDRTVLLAAGPDAEALLQNIITTDLSALGQDEARPGALLTPQGKILFDFLISRT
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHCC
GQDGFRLDCRSDLAQDFLKRLMLYRLRAKAELSIDNNAVISVSWGNDSLSSQTDSMSVVD
CCCCEEECHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHH
RRFPEALKVARRYGSADEGSADISAWDRLRVEHGVAESGRDYDLGDAFPHEILFDQNGGV
HHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
GLKKGCYVGQEVVSRMHHRGTARRRLVIVRGDKALPASGSQITADGRAIGALGTVCDADG
CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHCEECCCC
LAILRIDRAAEAIQAGNPILAGEAALSLKVPAFAKFTISVPDGPAETA
EEEEEEHHHHHHHHCCCCEEECCCEEEEECCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA