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The map label for this gene is cycH [H]

Identifier: 110633251

GI number: 110633251

Start: 987034

End: 988272

Strand: Direct

Name: cycH [H]

Synonym: Meso_0897

Alternate gene names: 110633251

Gene position: 987034-988272 (Clockwise)

Preceding gene: 110633250

Following gene: 110633252

Centisome position: 22.37

GC content: 65.05

Gene sequence:

>1239_bases
GTGCTCTTTGCCGGCAGTGACGGCAGCGGAAAATGCCGCATCGGTCGGCAGTTGGCACCGCGCGGCAAGACGGATATTGA
ACTCAACATGTTTTTCTGGGTTCTCGCAGCACTGCTAACCCTTGCCGCCGCGCTGGCCGTGATGCGGCCGTTCTTGCGCG
GGTTGACCACAGATGTGGCGGGCAGGGAGCACGATCTTTCCGTTTATCGTGATCAGTTGGCCGAGCTGGATCAGGAAGTA
AGGCGCGGGCTTGTGGCCGAGACGGAAGCGGCTGAGGCACGCGCGGAAATCGGCCGGCGCATTCTCCGGCTCTCGCAATC
TGTCGATGAAAGCGCGGAAGGGTCAGTCAAACCCGGTACGAGGCTGGCGCGCGCGGTGGCCATAGCGGCCGTATTGGCTG
TTCCGGCGATAAGTTGGGGCATCTATTCCCTGATTGGCTCGCCCGGCCTGCCGGCCATGCCATTGCAGGCAAGGCTCAAC
GAGGACCCGGCGCAGGCGCCGGTGGAAGACCTGGTCGCCCGCGCCGAGGCTTATCTGGCGGATCACCCCGAAGACGTGCG
CGGCTGGCAGACGCTGGCGCCGGTCTATATGCGGCTGGGGCGCTATTCGGATGCTGTGGCCGCCTATCAGCGGGCAATCG
ACTTGGCTGGCGCCAACCCCGAGTATGAAGCTGGCTTGGGCGAGGCGATGGTGGCGCGGAGCGGCGGGATCGTCACGGCG
GGTGCCGAGGCGGCGTTTAACCGCGCGCTGGCACTTGATGAGAAGAACGCTCGTGCACGCTTCTTCATCGCCCTGGCGAG
AGCGCAGGAAGGAAACGGGGGTGCGGCACGGGCTATTTGGGAGGAGATGGCCTCCGGCCTCCCGGAACAGTCGCCATGGA
AGGCTGCTGCCGCTCGAGCCATTGCGGGCCTCGCCCAGGATTCGGCGCAGGCTTCCGCTTCAGAAAGCGCTCCATCACAA
GACCAGCTCGCAGCAGCTCAGGAGATGACACCCGAAGCGCGCCAGGAGATGATAGAAGGTATGGTGGCGAGCCTCGACGC
GAAGCTGCGCGAGAGCCCGGCAGATCCGGAAGGCTGGGGGCGCCTGCTGCGCTCCTATGTCGTGCTTGGCCGAAGGGACG
ACGCGCTGGGGGCCCTGGACCGGGGACTTTCCGCCCTTGGACCCGACTCGCCGGACGGCAAGGCTTTAAGTGAATTGGCC
GGGACGCTCGGCCTCACAGACACGCAGGTGAATAAATGA

Upstream 100 bases:

>100_bases
CTGCTGGCGGTACGCGAACCTCGCGCGGCACGGCCTGCCGCAATCCGGACGGAAGCTGGACGCTGCTGGAATAGGCAGTC
TCGGGCCTGAATCAGGCAGG

Downstream 100 bases:

>100_bases
CGCGCAAGCAGAAGCGGCTGGCGGTCATCGGTTCGGGAATGGGCTTTCTCGCCCTGGCCGCGGCATTGACCTTTTATGCG
CTGGGGCAGCAGACGTCCTA

Product: tetratricopeptide TPR_2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MLFAGSDGSGKCRIGRQLAPRGKTDIELNMFFWVLAALLTLAAALAVMRPFLRGLTTDVAGREHDLSVYRDQLAELDQEV
RRGLVAETEAAEARAEIGRRILRLSQSVDESAEGSVKPGTRLARAVAIAAVLAVPAISWGIYSLIGSPGLPAMPLQARLN
EDPAQAPVEDLVARAEAYLADHPEDVRGWQTLAPVYMRLGRYSDAVAAYQRAIDLAGANPEYEAGLGEAMVARSGGIVTA
GAEAAFNRALALDEKNARARFFIALARAQEGNGGAARAIWEEMASGLPEQSPWKAAAARAIAGLAQDSAQASASESAPSQ
DQLAAAQEMTPEARQEMIEGMVASLDAKLRESPADPEGWGRLLRSYVVLGRRDDALGALDRGLSALGPDSPDGKALSELA
GTLGLTDTQVNK

Sequences:

>Translated_412_residues
MLFAGSDGSGKCRIGRQLAPRGKTDIELNMFFWVLAALLTLAAALAVMRPFLRGLTTDVAGREHDLSVYRDQLAELDQEV
RRGLVAETEAAEARAEIGRRILRLSQSVDESAEGSVKPGTRLARAVAIAAVLAVPAISWGIYSLIGSPGLPAMPLQARLN
EDPAQAPVEDLVARAEAYLADHPEDVRGWQTLAPVYMRLGRYSDAVAAYQRAIDLAGANPEYEAGLGEAMVARSGGIVTA
GAEAAFNRALALDEKNARARFFIALARAQEGNGGAARAIWEEMASGLPEQSPWKAAAARAIAGLAQDSAQASASESAPSQ
DQLAAAQEMTPEARQEMIEGMVASLDAKLRESPADPEGWGRLLRSYVVLGRRDDALGALDRGLSALGPDSPDGKALSELA
GTLGLTDTQVNK
>Mature_412_residues
MLFAGSDGSGKCRIGRQLAPRGKTDIELNMFFWVLAALLTLAAALAVMRPFLRGLTTDVAGREHDLSVYRDQLAELDQEV
RRGLVAETEAAEARAEIGRRILRLSQSVDESAEGSVKPGTRLARAVAIAAVLAVPAISWGIYSLIGSPGLPAMPLQARLN
EDPAQAPVEDLVARAEAYLADHPEDVRGWQTLAPVYMRLGRYSDAVAAYQRAIDLAGANPEYEAGLGEAMVARSGGIVTA
GAEAAFNRALALDEKNARARFFIALARAQEGNGGAARAIWEEMASGLPEQSPWKAAAARAIAGLAQDSAQASASESAPSQ
DQLAAAQEMTPEARQEMIEGMVASLDAKLRESPADPEGWGRLLRSYVVLGRRDDALGALDRGLSALGPDSPDGKALSELA
GTLGLTDTQVNK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43537; Mature: 43537

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFAGSDGSGKCRIGRQLAPRGKTDIELNMFFWVLAALLTLAAALAVMRPFLRGLTTDVA
CEECCCCCCCCEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GREHDLSVYRDQLAELDQEVRRGLVAETEAAEARAEIGRRILRLSQSVDESAEGSVKPGT
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
RLARAVAIAAVLAVPAISWGIYSLIGSPGLPAMPLQARLNEDPAQAPVEDLVARAEAYLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHH
DHPEDVRGWQTLAPVYMRLGRYSDAVAAYQRAIDLAGANPEYEAGLGEAMVARSGGIVTA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCEEEE
GAEAAFNRALALDEKNARARFFIALARAQEGNGGAARAIWEEMASGLPEQSPWKAAAARA
CHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
IAGLAQDSAQASASESAPSQDQLAAAQEMTPEARQEMIEGMVASLDAKLRESPADPEGWG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLLRSYVVLGRRDDALGALDRGLSALGPDSPDGKALSELAGTLGLTDTQVNK
HHHHHHHHHCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MLFAGSDGSGKCRIGRQLAPRGKTDIELNMFFWVLAALLTLAAALAVMRPFLRGLTTDVA
CEECCCCCCCCEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GREHDLSVYRDQLAELDQEVRRGLVAETEAAEARAEIGRRILRLSQSVDESAEGSVKPGT
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
RLARAVAIAAVLAVPAISWGIYSLIGSPGLPAMPLQARLNEDPAQAPVEDLVARAEAYLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHH
DHPEDVRGWQTLAPVYMRLGRYSDAVAAYQRAIDLAGANPEYEAGLGEAMVARSGGIVTA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCEEEE
GAEAAFNRALALDEKNARARFFIALARAQEGNGGAARAIWEEMASGLPEQSPWKAAAARA
CHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
IAGLAQDSAQASASESAPSQDQLAAAQEMTPEARQEMIEGMVASLDAKLRESPADPEGWG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLLRSYVVLGRRDDALGALDRGLSALGPDSPDGKALSELAGTLGLTDTQVNK
HHHHHHHHHCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]