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The map label for this gene is ybiS [H]

Identifier: 110633216

GI number: 110633216

Start: 953700

End: 954443

Strand: Reverse

Name: ybiS [H]

Synonym: Meso_0859

Alternate gene names: 110633216

Gene position: 954443-953700 (Counterclockwise)

Preceding gene: 110633217

Following gene: 110633214

Centisome position: 21.63

GC content: 62.77

Gene sequence:

>744_bases
ATGTCCTCAACAGTTGAACCTTCCCGCACCATGTCCCGCCGCGCGTTCCTGACAGCCAGCTTGGTGGGTGCTGCATCCCT
TTCAGGCTGTGTGAACGTGCCTTCCACCGCTCCGATCGTGTCCTTCCAGCCCGCACTTCCTCCGGTCGAGCCGCGCTCCA
ATTCGGAGATGTACGCCGCGATGGTCGACGGCGGCTACGAAATTCCGGCCGTACCGGTCTCCAGGATGGACCCGCGTTAT
CTGCGGCAGGAAGTTGTTGATCCAACGGGCGAAGCTCCCGGATCTATCGTGATCGATACCTCCCAGCATTTCCTATACTT
GGTCCGGGGCGGCGGCCGCGCGATGCGTTACGGCGTTGGGCTCGGCCGTGAAGGCTTCGCCTGGGCGGGCCGCGCGCAGA
TCGACCGCAAGGCGATGTGGCCGAAATGGCATCCGCCGGCAGAGATGATCGAGCGCCAGCCGGAGTTGGAGAAGTACAAG
ACCGAATACGATAAGGCGACCAACGAGTGGCGGGGCGGCATGGAGCCCGGCATCATGAATCCGCTCGGCGCACGCGCGAT
GTATCTGTATCAGGATGGTAAGGACACGCTCTACCGCATCCACGGCTCTCCCGAGTGGTGGTCGATCGGCAAATCGGTGT
CCTCCGGCTGCGTGCGCATGATCAATCAGGACGTGATCGATCTCTACGACCGCGTTCCGGAGGGCACGCCTGTGCTGGTG
ACGAGCGGTCTTCGCACGGTCTAG

Upstream 100 bases:

>100_bases
TGCACCGCAATGAATTACCCGGTTATCCGAGTATTAGCCGACGCATATATCTCTGCCTCCTCCCGCATTGATTGTTCTTG
TCCTCCCGAGACCTATGGCC

Downstream 100 bases:

>100_bases
GCGACGGCCCCATTGGCCTGCCGGCCATCTCCCCCACAAGGGGAAGATTGAGCCGGCCGTGCGGCACCTGTTCTGCAACA
TTGATGATTGGCGAAAGCAG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSSTVEPSRTMSRRAFLTASLVGAASLSGCVNVPSTAPIVSFQPALPPVEPRSNSEMYAAMVDGGYEIPAVPVSRMDPRY
LRQEVVDPTGEAPGSIVIDTSQHFLYLVRGGGRAMRYGVGLGREGFAWAGRAQIDRKAMWPKWHPPAEMIERQPELEKYK
TEYDKATNEWRGGMEPGIMNPLGARAMYLYQDGKDTLYRIHGSPEWWSIGKSVSSGCVRMINQDVIDLYDRVPEGTPVLV
TSGLRTV

Sequences:

>Translated_247_residues
MSSTVEPSRTMSRRAFLTASLVGAASLSGCVNVPSTAPIVSFQPALPPVEPRSNSEMYAAMVDGGYEIPAVPVSRMDPRY
LRQEVVDPTGEAPGSIVIDTSQHFLYLVRGGGRAMRYGVGLGREGFAWAGRAQIDRKAMWPKWHPPAEMIERQPELEKYK
TEYDKATNEWRGGMEPGIMNPLGARAMYLYQDGKDTLYRIHGSPEWWSIGKSVSSGCVRMINQDVIDLYDRVPEGTPVLV
TSGLRTV
>Mature_246_residues
SSTVEPSRTMSRRAFLTASLVGAASLSGCVNVPSTAPIVSFQPALPPVEPRSNSEMYAAMVDGGYEIPAVPVSRMDPRYL
RQEVVDPTGEAPGSIVIDTSQHFLYLVRGGGRAMRYGVGLGREGFAWAGRAQIDRKAMWPKWHPPAEMIERQPELEKYKT
EYDKATNEWRGGMEPGIMNPLGARAMYLYQDGKDTLYRIHGSPEWWSIGKSVSSGCVRMINQDVIDLYDRVPEGTPVLVT
SGLRTV

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=160, Percent_Identity=28.75, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27269; Mature: 27138

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTVEPSRTMSRRAFLTASLVGAASLSGCVNVPSTAPIVSFQPALPPVEPRSNSEMYAA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEE
MVDGGYEIPAVPVSRMDPRYLRQEVVDPTGEAPGSIVIDTSQHFLYLVRGGGRAMRYGVG
EECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEEEEECCCCEEEECCC
LGREGFAWAGRAQIDRKAMWPKWHPPAEMIERQPELEKYKTEYDKATNEWRGGMEPGIMN
CCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
PLGARAMYLYQDGKDTLYRIHGSPEWWSIGKSVSSGCVRMINQDVIDLYDRVPEGTPVLV
CCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
TSGLRTV
ECCCCCC
>Mature Secondary Structure 
SSTVEPSRTMSRRAFLTASLVGAASLSGCVNVPSTAPIVSFQPALPPVEPRSNSEMYAA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEE
MVDGGYEIPAVPVSRMDPRYLRQEVVDPTGEAPGSIVIDTSQHFLYLVRGGGRAMRYGVG
EECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCEEEEEEECCCCEEEECCC
LGREGFAWAGRAQIDRKAMWPKWHPPAEMIERQPELEKYKTEYDKATNEWRGGMEPGIMN
CCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
PLGARAMYLYQDGKDTLYRIHGSPEWWSIGKSVSSGCVRMINQDVIDLYDRVPEGTPVLV
CCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
TSGLRTV
ECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]