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The map label for this gene is degT [H]

Identifier: 110633189

GI number: 110633189

Start: 922570

End: 923751

Strand: Direct

Name: degT [H]

Synonym: Meso_0832

Alternate gene names: 110633189

Gene position: 922570-923751 (Clockwise)

Preceding gene: 110633187

Following gene: 110633190

Centisome position: 20.91

GC content: 62.27

Gene sequence:

>1182_bases
TTGTTGCGAAACTCCCGGCGCACGCCTATTCACCCTCATCCTATCACCACGGACAAGGCATCTGGCATGCAGTTCATCGA
CCTCGGTAAGCAGCGCGATCGAATTCAGGAAAAGCTTGAGAAACGGCTGGCAAAGGTGCTGGCCGAGGGGCGCTATATCC
TTGGCCCCGAGGTCGCCGAGTTCGAGGAGAAGATCGCGGCCTATCTGGGTGTCAAATATGCCATTGCCTGCGCAAATGGC
ACCGACGCGCTTTTGATCCCGCTCATGGCCAAGGGCATCGGGCCGGGGGATGCCGTCTTCGTGCCGAGCTTTACCTTTGC
GGCCACCGCCGAGGTTGTGGCGCTCGCGGGCGCTTCGCCGGTCTTCGTCGATATCGACCCGGAAACCTACAATATTGATA
TCGACAGCCTGCAAGCGGCGATCGCTGCTGTCCGGGAAAAGGGAGAGCTTGCGCCCAAGGCAATCATACCGGTCGACCTT
TTCGGCCTCGCCGCCGACTATTCCGCCATCTCACGGATTGCCGCGCGCGAGGGGCTGTTCGTGATCGAGGATGCCGCCCA
GGCCACCGGCGGCTCGCAGGGCAATACCATGTGCGGCGCCTTCGGCGATGTGGCAGGCACCAGCTTCTACCCGGCCAAGC
CGCTCGGCTGTTACGGCGACGGCGGCGCCATGTTCACCAATGACGGGGACCTTGCCGAAATCCTCCGCTCCGTCGCGTTC
CATGGCAAGGGGCAGAGCCAATATGACAATGTGCGAATCGGCGTCAATTCGCGGCTCGACACCATGCAGGCGGCGATCCT
GATCGAGAAGCTCGCCATCCTGTCGGAGGAAATGGAGCTTCGCCAGAAGGTGGCCGCGCGCTACAGCGAGGCCTTGGGGG
ACGTGGTGAAGGTTCCCGCGATCCCATCGGGCAACCGTTCCGCCTGGGCGCAATATGCGATCGAAACGCCTGCGCGCGAC
AAGGTGAGGGCGGCGCTCAAGGAAGAGGGCATCCCTTCCGTCGTCTATTATGAAAAGCCGCTGCACCTGCAGGAGGCCTA
CGCCGCCTATCCACGCGCGCCGAAAGGTCTGGAGGTTTCGGAAACCCTGCCGGAACGTATCCTCTGCCTGCCGATGCACC
CCTATCTATCCGAGGCAGACCAGGACCGGGTCGTCGCCACGATTCGTAGCGCGGTGAAGTAA

Upstream 100 bases:

>100_bases
GACTATTTGTTAGAGGCGAACTTTGGGCAACGCAAACGCCAAGCTGTTCGCAGCGGGTCACCGCGTGTAACAATGCCTGC
GACAGAGTGAACGTTCCTTT

Downstream 100 bases:

>100_bases
GGGGCGGCTTCTCTCCCTCGTTATCAAAGAGAATACCCAGCCAGCCTCATGGCCGGCGGTGACGCGCTTGTGTTCAGGCA
TGAACCCTCGGGCTTGACCC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MLRNSRRTPIHPHPITTDKASGMQFIDLGKQRDRIQEKLEKRLAKVLAEGRYILGPEVAEFEEKIAAYLGVKYAIACANG
TDALLIPLMAKGIGPGDAVFVPSFTFAATAEVVALAGASPVFVDIDPETYNIDIDSLQAAIAAVREKGELAPKAIIPVDL
FGLAADYSAISRIAAREGLFVIEDAAQATGGSQGNTMCGAFGDVAGTSFYPAKPLGCYGDGGAMFTNDGDLAEILRSVAF
HGKGQSQYDNVRIGVNSRLDTMQAAILIEKLAILSEEMELRQKVAARYSEALGDVVKVPAIPSGNRSAWAQYAIETPARD
KVRAALKEEGIPSVVYYEKPLHLQEAYAAYPRAPKGLEVSETLPERILCLPMHPYLSEADQDRVVATIRSAVK

Sequences:

>Translated_393_residues
MLRNSRRTPIHPHPITTDKASGMQFIDLGKQRDRIQEKLEKRLAKVLAEGRYILGPEVAEFEEKIAAYLGVKYAIACANG
TDALLIPLMAKGIGPGDAVFVPSFTFAATAEVVALAGASPVFVDIDPETYNIDIDSLQAAIAAVREKGELAPKAIIPVDL
FGLAADYSAISRIAAREGLFVIEDAAQATGGSQGNTMCGAFGDVAGTSFYPAKPLGCYGDGGAMFTNDGDLAEILRSVAF
HGKGQSQYDNVRIGVNSRLDTMQAAILIEKLAILSEEMELRQKVAARYSEALGDVVKVPAIPSGNRSAWAQYAIETPARD
KVRAALKEEGIPSVVYYEKPLHLQEAYAAYPRAPKGLEVSETLPERILCLPMHPYLSEADQDRVVATIRSAVK
>Mature_393_residues
MLRNSRRTPIHPHPITTDKASGMQFIDLGKQRDRIQEKLEKRLAKVLAEGRYILGPEVAEFEEKIAAYLGVKYAIACANG
TDALLIPLMAKGIGPGDAVFVPSFTFAATAEVVALAGASPVFVDIDPETYNIDIDSLQAAIAAVREKGELAPKAIIPVDL
FGLAADYSAISRIAAREGLFVIEDAAQATGGSQGNTMCGAFGDVAGTSFYPAKPLGCYGDGGAMFTNDGDLAEILRSVAF
HGKGQSQYDNVRIGVNSRLDTMQAAILIEKLAILSEEMELRQKVAARYSEALGDVVKVPAIPSGNRSAWAQYAIETPARD
KVRAALKEEGIPSVVYYEKPLHLQEAYAAYPRAPKGLEVSETLPERILCLPMHPYLSEADQDRVVATIRSAVK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=367, Percent_Identity=32.9700272479564, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI2367285, Length=313, Percent_Identity=31.9488817891374, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42254; Mature: 42254

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRNSRRTPIHPHPITTDKASGMQFIDLGKQRDRIQEKLEKRLAKVLAEGRYILGPEVAE
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHH
FEEKIAAYLGVKYAIACANGTDALLIPLMAKGIGPGDAVFVPSFTFAATAEVVALAGASP
HHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCCC
VFVDIDPETYNIDIDSLQAAIAAVREKGELAPKAIIPVDLFGLAADYSAISRIAAREGLF
EEEEECCCEEECCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCE
VIEDAAQATGGSQGNTMCGAFGDVAGTSFYPAKPLGCYGDGGAMFTNDGDLAEILRSVAF
EEECCHHHCCCCCCCEEECCCHHHCCCCCCCCCCCCEECCCCEEECCCCHHHHHHHHHHH
HGKGQSQYDNVRIGVNSRLDTMQAAILIEKLAILSEEMELRQKVAARYSEALGDVVKVPA
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
IPSGNRSAWAQYAIETPARDKVRAALKEEGIPSVVYYEKPLHLQEAYAAYPRAPKGLEVS
CCCCCHHHHHHHEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCCHH
ETLPERILCLPMHPYLSEADQDRVVATIRSAVK
HHHCHHEEEEECCHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MLRNSRRTPIHPHPITTDKASGMQFIDLGKQRDRIQEKLEKRLAKVLAEGRYILGPEVAE
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHH
FEEKIAAYLGVKYAIACANGTDALLIPLMAKGIGPGDAVFVPSFTFAATAEVVALAGASP
HHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCCC
VFVDIDPETYNIDIDSLQAAIAAVREKGELAPKAIIPVDLFGLAADYSAISRIAAREGLF
EEEEECCCEEECCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCE
VIEDAAQATGGSQGNTMCGAFGDVAGTSFYPAKPLGCYGDGGAMFTNDGDLAEILRSVAF
EEECCHHHCCCCCCCEEECCCHHHCCCCCCCCCCCCEECCCCEEECCCCHHHHHHHHHHH
HGKGQSQYDNVRIGVNSRLDTMQAAILIEKLAILSEEMELRQKVAARYSEALGDVVKVPA
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
IPSGNRSAWAQYAIETPARDKVRAALKEEGIPSVVYYEKPLHLQEAYAAYPRAPKGLEVS
CCCCCHHHHHHHEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCCHH
ETLPERILCLPMHPYLSEADQDRVVATIRSAVK
HHHCHHEEEEECCHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]