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The map label for this gene is ygaE [C]

Identifier: 110633187

GI number: 110633187

Start: 920171

End: 920914

Strand: Direct

Name: ygaE [C]

Synonym: Meso_0830

Alternate gene names: 110633187

Gene position: 920171-920914 (Clockwise)

Preceding gene: 110633182

Following gene: 110633189

Centisome position: 20.85

GC content: 62.23

Gene sequence:

>744_bases
ATGGATGAACATCGTAGCTACAGCGTTCCGACCGCCCTAAATGCGCGGTCATTGGCCGCTTCGGCCAAGACGCTGGCCGA
TAAGGCTTTTTTCCTGATCAAAGCGGATATCATCGATTGCGTCCTGCCGCCCGGGGAGCTGCTGTCCACCCAGCAGCTCA
TGGCGCATACCGGACTGGGCTTATCGGCTATCCGCGCCGCCATGGAGCGGCTGGTTGCCGGCCAATGGGTGACGTCCGCG
CCCAACAAGGGCTACCGGATCGACGGCATCACGATTAAGGACGTCATCGAGCTCTACGATCTCTCCGAGATCATCTCGCC
CCAGCTCTCCCGCATGAGCTGCGGCCGGATCGGCGATGTCTATGACCGATTGATCTCGCTCGCCGAGATAGCTTGCGGGC
CGCAGCCGGCCCGGAGCGAAGAGGACGAGCACCGCGTGCTGCTCGCGAGCGGAGAGATCCTGCGCACCATCCGGCTCGCC
TCGAACAATTCCTACGCAATCTCCCTCACGCAGCAGATCACCGAGCGGCTCGACCGCGTGGTGGCGGCCCGCCGACACTA
CTCACAGGCCCCTATCGATTTCCGCCGCGATTTCCGCCCCCTTATCGAAGCCCTGCGGGATAACCAGCCCGATGCGGCCG
AGGCTGCGTCCCGGGCCAATGTTCACCGCATGCGTTCGATCGTCATCGATCACATCTTGCGGGCCGAAAGTTTTGCCAAT
TCGCGTATTCTTGCGGGAATGTAG

Upstream 100 bases:

>100_bases
ATTGACGTCCGATAACACACTTTCAATGTGCTGCAACTTCCCTCCCACGCTCGGCTTTGGTAATTGCTCCCAGTCGCCAC
CTAGAGGATTCCCTTGCTCA

Downstream 100 bases:

>100_bases
CAAGTTTGGGCGCAGAATTGCCCTCGCCAGGCTTGGGGGCGGCGTAATGGCTGTGAATCCTGCCGCCCCAGCCAAATCTT
GCGACCGGTTTTCTGATTGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDEHRSYSVPTALNARSLAASAKTLADKAFFLIKADIIDCVLPPGELLSTQQLMAHTGLGLSAIRAAMERLVAGQWVTSA
PNKGYRIDGITIKDVIELYDLSEIISPQLSRMSCGRIGDVYDRLISLAEIACGPQPARSEEDEHRVLLASGEILRTIRLA
SNNSYAISLTQQITERLDRVVAARRHYSQAPIDFRRDFRPLIEALRDNQPDAAEAASRANVHRMRSIVIDHILRAESFAN
SRILAGM

Sequences:

>Translated_247_residues
MDEHRSYSVPTALNARSLAASAKTLADKAFFLIKADIIDCVLPPGELLSTQQLMAHTGLGLSAIRAAMERLVAGQWVTSA
PNKGYRIDGITIKDVIELYDLSEIISPQLSRMSCGRIGDVYDRLISLAEIACGPQPARSEEDEHRVLLASGEILRTIRLA
SNNSYAISLTQQITERLDRVVAARRHYSQAPIDFRRDFRPLIEALRDNQPDAAEAASRANVHRMRSIVIDHILRAESFAN
SRILAGM
>Mature_247_residues
MDEHRSYSVPTALNARSLAASAKTLADKAFFLIKADIIDCVLPPGELLSTQQLMAHTGLGLSAIRAAMERLVAGQWVTSA
PNKGYRIDGITIKDVIELYDLSEIISPQLSRMSCGRIGDVYDRLISLAEIACGPQPARSEEDEHRVLLASGEILRTIRLA
SNNSYAISLTQQITERLDRVVAARRHYSQAPIDFRRDFRPLIEALRDNQPDAAEAASRANVHRMRSIVIDHILRAESFAN
SRILAGM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27320; Mature: 27320

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEHRSYSVPTALNARSLAASAKTLADKAFFLIKADIIDCVLPPGELLSTQQLMAHTGLG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
LSAIRAAMERLVAGQWVTSAPNKGYRIDGITIKDVIELYDLSEIISPQLSRMSCGRIGDV
HHHHHHHHHHHHHCCHHCCCCCCCEEECCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
YDRLISLAEIACGPQPARSEEDEHRVLLASGEILRTIRLASNNSYAISLTQQITERLDRV
HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEHHHHHHHHHHHH
VAARRHYSQAPIDFRRDFRPLIEALRDNQPDAAEAASRANVHRMRSIVIDHILRAESFAN
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SRILAGM
CCCCCCC
>Mature Secondary Structure
MDEHRSYSVPTALNARSLAASAKTLADKAFFLIKADIIDCVLPPGELLSTQQLMAHTGLG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
LSAIRAAMERLVAGQWVTSAPNKGYRIDGITIKDVIELYDLSEIISPQLSRMSCGRIGDV
HHHHHHHHHHHHHCCHHCCCCCCCEEECCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
YDRLISLAEIACGPQPARSEEDEHRVLLASGEILRTIRLASNNSYAISLTQQITERLDRV
HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEHHHHHHHHHHHH
VAARRHYSQAPIDFRRDFRPLIEALRDNQPDAAEAASRANVHRMRSIVIDHILRAESFAN
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SRILAGM
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA