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The map label for this gene is 110633061

Identifier: 110633061

GI number: 110633061

Start: 778173

End: 779327

Strand: Reverse

Name: 110633061

Synonym: Meso_0704

Alternate gene names: NA

Gene position: 779327-778173 (Counterclockwise)

Preceding gene: 110633062

Following gene: 110633060

Centisome position: 17.66

GC content: 61.39

Gene sequence:

>1155_bases
ATGGAACAGATCGCAAAGGCAGACACTGCCGCTTTCAGCGGCGGAGGGTCCGCCATGGCAAACGCGATCATAGACGAGGC
GGGGCTGCGTGTCGGTGACGACCGCCGCAGAGGGCGTGGCGCCGGCATCAATCCCAGCGGACGCTTCGAGCCACTCACCC
GCCATGTTTTCGACGACGGGTGGGAGACATTGGAGGAATTGCCCCCCTTCAGGACCGAAGTGCAAATCGAAAAGCCGCGC
ACCATAATTACGCGCAACACCTCGCCCGATATTTCCTTCGACCGCTCAATCAATCCTTATCGTGGCTGTGAGCACGGTTG
TGTCTATTGCTTCGCCCGACCGACGCACAGCTATATGGGTCTTTCACCCGGCTTGGATTTCGAATCAAAGCTATTCGCGA
AGCCCGATGCACCACGGCTCCTGGAAAAGGAGCTCGCCAAGCCCGGCTATGAGCCGCGCACAATCGCGATCGGCACAAAT
ACGGACCCGTACCAGCCGGTCGAAAAGAAGTGGCGCATCATGCGCGACATACTCGAAGTGCTCGATGCGCATAACCATCC
GGTTGGGATCGTCACCAAATCGGCGCTGGTGATGCGCGACATCGATATCCTCTCGCGCATGGCGGAACGGGGGCTGGCCA
AGGTGGCGCTCTCGGTCACAACGCTTGACCGCCAGCTTGCCCGGACGATGGAGCCCAGGGCCGCCACGCCGACGCGGCGG
CTGGAGGCGATGCGCGCGCTGAACGAGGCGGGCGTTCCCGCATCCGTGATGATCGGGCCTGTCATCCCCGGTCTGAACGA
CAGCGAGATCGAGCGCATTCTGGAATCAGCCCATGCGGTCGGCGCCAAAGAGGCGGGCTACGTAATCCTTAGGCTGCCTC
TGGAGGTAAGCCCGATCTTTAAGGACTGGCTCCTGCGGCATTACCCGGACCGCTACCGGCATGTGATGTCGCTCGTGCGC
TCCATGCGCGGAGGCAAGGATTACGATTCCGAATGGGGCAAGCGCATGAAGGGCACAGGCCCCTATGCCTGGCAAATCGG
GCGCCGGTTCGAGATCGCGGCGCGGAGAATAGGACTTAATCTCGAACGGCGGAAGCTTCGCACCGATCTCTTCAAGGCAG
GAAAGGGCGAGGGGGAACAGCTCAGCCTGCTTTAG

Upstream 100 bases:

>100_bases
CCGTTCCGATCTGATCGCGAAAAGTTCTTGATTTGTTCCATATCAGAAGATAGGAATAGATTCATCCAAGGACATCGGCC
CGGCAGCGCGGAGGCAGACG

Downstream 100 bases:

>100_bases
CGGAAGCGGCAGGGCAAGCTCCGCCGGATGGCCGAAGCACTCGGGTCCGGCAATGAAACCTTGCCTAATGATATGCCGGC
AGCAGTCCCATGCCCTGCCC

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MEQIAKADTAAFSGGGSAMANAIIDEAGLRVGDDRRRGRGAGINPSGRFEPLTRHVFDDGWETLEELPPFRTEVQIEKPR
TIITRNTSPDISFDRSINPYRGCEHGCVYCFARPTHSYMGLSPGLDFESKLFAKPDAPRLLEKELAKPGYEPRTIAIGTN
TDPYQPVEKKWRIMRDILEVLDAHNHPVGIVTKSALVMRDIDILSRMAERGLAKVALSVTTLDRQLARTMEPRAATPTRR
LEAMRALNEAGVPASVMIGPVIPGLNDSEIERILESAHAVGAKEAGYVILRLPLEVSPIFKDWLLRHYPDRYRHVMSLVR
SMRGGKDYDSEWGKRMKGTGPYAWQIGRRFEIAARRIGLNLERRKLRTDLFKAGKGEGEQLSLL

Sequences:

>Translated_384_residues
MEQIAKADTAAFSGGGSAMANAIIDEAGLRVGDDRRRGRGAGINPSGRFEPLTRHVFDDGWETLEELPPFRTEVQIEKPR
TIITRNTSPDISFDRSINPYRGCEHGCVYCFARPTHSYMGLSPGLDFESKLFAKPDAPRLLEKELAKPGYEPRTIAIGTN
TDPYQPVEKKWRIMRDILEVLDAHNHPVGIVTKSALVMRDIDILSRMAERGLAKVALSVTTLDRQLARTMEPRAATPTRR
LEAMRALNEAGVPASVMIGPVIPGLNDSEIERILESAHAVGAKEAGYVILRLPLEVSPIFKDWLLRHYPDRYRHVMSLVR
SMRGGKDYDSEWGKRMKGTGPYAWQIGRRFEIAARRIGLNLERRKLRTDLFKAGKGEGEQLSLL
>Mature_384_residues
MEQIAKADTAAFSGGGSAMANAIIDEAGLRVGDDRRRGRGAGINPSGRFEPLTRHVFDDGWETLEELPPFRTEVQIEKPR
TIITRNTSPDISFDRSINPYRGCEHGCVYCFARPTHSYMGLSPGLDFESKLFAKPDAPRLLEKELAKPGYEPRTIAIGTN
TDPYQPVEKKWRIMRDILEVLDAHNHPVGIVTKSALVMRDIDILSRMAERGLAKVALSVTTLDRQLARTMEPRAATPTRR
LEAMRALNEAGVPASVMIGPVIPGLNDSEIERILESAHAVGAKEAGYVILRLPLEVSPIFKDWLLRHYPDRYRHVMSLVR
SMRGGKDYDSEWGKRMKGTGPYAWQIGRRFEIAARRIGLNLERRKLRTDLFKAGKGEGEQLSLL

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 43027; Mature: 43027

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQIAKADTAAFSGGGSAMANAIIDEAGLRVGDDRRRGRGAGINPSGRFEPLTRHVFDDG
CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHH
WETLEELPPFRTEVQIEKPRTIITRNTSPDISFDRSINPYRGCEHGCVYCFARPTHSYMG
HHHHHHCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
LSPGLDFESKLFAKPDAPRLLEKELAKPGYEPRTIAIGTNTDPYQPVEKKWRIMRDILEV
CCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
LDAHNHPVGIVTKSALVMRDIDILSRMAERGLAKVALSVTTLDRQLARTMEPRAATPTRR
HHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
LEAMRALNEAGVPASVMIGPVIPGLNDSEIERILESAHAVGAKEAGYVILRLPLEVSPIF
HHHHHHHHHCCCCHHEEHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHH
KDWLLRHYPDRYRHVMSLVRSMRGGKDYDSEWGKRMKGTGPYAWQIGRRFEIAARRIGLN
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHCCCHHHHHHHHHCCC
LERRKLRTDLFKAGKGEGEQLSLL
HHHHHHHHHHHHCCCCCCCEECCC
>Mature Secondary Structure
MEQIAKADTAAFSGGGSAMANAIIDEAGLRVGDDRRRGRGAGINPSGRFEPLTRHVFDDG
CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHH
WETLEELPPFRTEVQIEKPRTIITRNTSPDISFDRSINPYRGCEHGCVYCFARPTHSYMG
HHHHHHCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
LSPGLDFESKLFAKPDAPRLLEKELAKPGYEPRTIAIGTNTDPYQPVEKKWRIMRDILEV
CCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
LDAHNHPVGIVTKSALVMRDIDILSRMAERGLAKVALSVTTLDRQLARTMEPRAATPTRR
HHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
LEAMRALNEAGVPASVMIGPVIPGLNDSEIERILESAHAVGAKEAGYVILRLPLEVSPIF
HHHHHHHHHCCCCHHEEHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHH
KDWLLRHYPDRYRHVMSLVRSMRGGKDYDSEWGKRMKGTGPYAWQIGRRFEIAARRIGLN
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHCCCHHHHHHHHHCCC
LERRKLRTDLFKAGKGEGEQLSLL
HHHHHHHHHHHHCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]