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The map label for this gene is yubM [H]

Identifier: 110632898

GI number: 110632898

Start: 590666

End: 592810

Strand: Reverse

Name: yubM [H]

Synonym: Meso_0538

Alternate gene names: 110632898

Gene position: 592810-590666 (Counterclockwise)

Preceding gene: 110632899

Following gene: 110632897

Centisome position: 13.43

GC content: 66.48

Gene sequence:

>2145_bases
ATGGCCACTGCCATTCAGAAGATCACCCTGTCGCCGTCGCGCGACATCCCCTTCAACAAGCTCACGCTCTCGCAGGCGAA
TGTCAGGCGCATCAAAGCCGGCATTTCGATCGAGGAACTGGCCGAGGACATCGCGCGCCGCGGTCTCCTGCAGAGCCTCA
ACGTCCGTCCTATCATCGATGCCGATGGCGCTGAGACCGGCCTGTACGAGATCCCGGCCGGCGGGCGTCGCTTCCGGGCG
CTCGAGCGTCTGGTGAAGCAGAAGCGCCTCGCCAAGACAGCCGCGGTGCCGTGCGTCGTGCGCGATCCCGCAACATCGAT
CCTGGCCGAAGATGACTCCCTCGCGGAGAACATCCAGCGCGCGCCGCTCCACCCGCTCGATCAGTTCCGGGCATTCCAGG
CGCTGCGCGACAAGGGCCAGTCGGAGGAAGACATTGCTGCGGCCTTCTTCACCTCCGCCCATGTGGTGAAGCAGCGTCTG
CGCCTCGCGAGCGTCTCGCCGAAGCTTCTCGACATCTATGCCGCGGACGGCATGACGCTGGAGCAGCTGATGGCCTTCAC
AGTCTGCTCCGACCATGCAAGGCAGGAACAGGTCTGGGAGACGATCGCAGGCTCCTGGTCCAAGGAGTCCTATCAGATCC
GCCGCATGCTGACCGAGAAGACGGTGCGCGCGTCGGACCGCCGCGCCATGTTCGTCGGGCTCGATGCCTATGAAGCCGCT
GGCGGCACGGTCCTGCGCGATCTCTTCGAACAGGACGATGGCGGCTGGCTCGCCGATGTCGCCCTGCTCGATACCCTGGT
TGCCGCCAAGCTGAAGACAGAGGCTGAGGCCATCGCGGCCGAAGGTTGGAAGTGGATCGAGGTCGCTGCCGACTTCCCCT
ACGGTCACACCCACGGTCTGCGCCAGATCGAGGGTGTCGCCGCCGAACGATCGGCTGACGAGCAGGCGACGATCGACGCG
CTCAACGCTGAGTATCAGCGGCTCGAAGCCGAGTATGAAGGTGCGGACGAATTGCCAGACGATGTCGATGCGCGGCTCGG
CGAGATCGAGGCCCTGCTGGATGAGCTCGACACCCGGCCGGTGATCTTTGATCCCTGCGATATCACGCGTGCTGGCGTCT
TCGTGAGCATCGGCGCGGACGGCAGGCTCGTTGTCGATCGCGGCTGTGTTCGCCCGGACGACGAGGCGCCCCTCGTCCTG
CCCGATGACGAGACCGATGGCGCTACGGCGGCCACCAGCGCCCAAGCCGGCGAACCCGGACCGAGCGGCACGTCCCGCAC
CGTCATCACGGTCGGCGGGCAGCCGATCGAAAGCGAGGACGACGAGGACGACGTAATCAAGCCGTTGCCCGAGCGCCTAG
TGATCGAACTGACCGCCCATCGCACGCTCGCGCTGCGCGACGCCGTGGCGAGCAACCCACAGATCGCGCTGACGGCTCTG
CTGCACAAGCTCGTCATCGACACATTCCAGCGCACCAGCACCGGCGGCGGATGCCTCGAAGCGTCCGTGCGACACGTCTT
CTTCCCCGCGCAGGCCGCCGACCTCAAGGACAGCCCCTCCGCATGCGCGATCGCGGAGCGTCACGACGCCTGGAAGGCCG
ATCTTCCGCAGGACGATCAGGCGCTCTGGGACTGGCTGTCGGCACTCGACGATGCGAGCCGACTCGCGCTGCTCGCTCAT
TGCGTGAGCTTCGGCGTCAACGCGCTTTACGAGAAGCCGAACCCCTACGGGGGGAACGGCGTGTCCCAGCACGGGCTCGA
ACGCCGTCTCACCCAGGCCGACCGGCTCGCGCGGGAGACTGGTCTCGACATGGTGGAGGCCGGATGGCGTCCTTCGGTCG
ACAATTATCTCGGCCGGGTCCCGAAGCGCCGCATCGTCGAGGCCGTGCGTGAGGGCGCGGGAGACCGGGCTGCGCAGCTC
ATCGAGCATCTGAAGAAGGCTGAAATGGCCAAGGAAGCCGAACGCCTTCTCGCCGACGCCCGGTGGCTGCCCGAGCCGCT
GCGGCTCGCCCACACGGACACATCCTCCGAACCGGCCGAACCCGAAGCTGAGGCGAGCTCCGTGGATCTGCCGGCGTTTC
TCTCAGGTGACGAGGAAGCTTCGGACGAAGATCCCGAGCCGCTCCCGGCCATCGCAGCCGAGTAG

Upstream 100 bases:

>100_bases
GGCTTTCCGGAAGCAATGAGAGGAAGAGGGCTGCGCCGATTTTCGTGACGGGTTGGAGGTCGGGAGAGAGGCTCCCGGCC
GCCCGTCGCGGAGACCTGTC

Downstream 100 bases:

>100_bases
CCGATCCAGGCGGGACCGCTCCGGTGGTCCCGCATCTTTCCTCACACGCCCCTTCCATAAGCCCGGTCGCCACGCCGGGC
TTTTCCATTTTCGTGGGAGA

Product: ParB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 714; Mature: 713

Protein sequence:

>714_residues
MATAIQKITLSPSRDIPFNKLTLSQANVRRIKAGISIEELAEDIARRGLLQSLNVRPIIDADGAETGLYEIPAGGRRFRA
LERLVKQKRLAKTAAVPCVVRDPATSILAEDDSLAENIQRAPLHPLDQFRAFQALRDKGQSEEDIAAAFFTSAHVVKQRL
RLASVSPKLLDIYAADGMTLEQLMAFTVCSDHARQEQVWETIAGSWSKESYQIRRMLTEKTVRASDRRAMFVGLDAYEAA
GGTVLRDLFEQDDGGWLADVALLDTLVAAKLKTEAEAIAAEGWKWIEVAADFPYGHTHGLRQIEGVAAERSADEQATIDA
LNAEYQRLEAEYEGADELPDDVDARLGEIEALLDELDTRPVIFDPCDITRAGVFVSIGADGRLVVDRGCVRPDDEAPLVL
PDDETDGATAATSAQAGEPGPSGTSRTVITVGGQPIESEDDEDDVIKPLPERLVIELTAHRTLALRDAVASNPQIALTAL
LHKLVIDTFQRTSTGGGCLEASVRHVFFPAQAADLKDSPSACAIAERHDAWKADLPQDDQALWDWLSALDDASRLALLAH
CVSFGVNALYEKPNPYGGNGVSQHGLERRLTQADRLARETGLDMVEAGWRPSVDNYLGRVPKRRIVEAVREGAGDRAAQL
IEHLKKAEMAKEAERLLADARWLPEPLRLAHTDTSSEPAEPEAEASSVDLPAFLSGDEEASDEDPEPLPAIAAE

Sequences:

>Translated_714_residues
MATAIQKITLSPSRDIPFNKLTLSQANVRRIKAGISIEELAEDIARRGLLQSLNVRPIIDADGAETGLYEIPAGGRRFRA
LERLVKQKRLAKTAAVPCVVRDPATSILAEDDSLAENIQRAPLHPLDQFRAFQALRDKGQSEEDIAAAFFTSAHVVKQRL
RLASVSPKLLDIYAADGMTLEQLMAFTVCSDHARQEQVWETIAGSWSKESYQIRRMLTEKTVRASDRRAMFVGLDAYEAA
GGTVLRDLFEQDDGGWLADVALLDTLVAAKLKTEAEAIAAEGWKWIEVAADFPYGHTHGLRQIEGVAAERSADEQATIDA
LNAEYQRLEAEYEGADELPDDVDARLGEIEALLDELDTRPVIFDPCDITRAGVFVSIGADGRLVVDRGCVRPDDEAPLVL
PDDETDGATAATSAQAGEPGPSGTSRTVITVGGQPIESEDDEDDVIKPLPERLVIELTAHRTLALRDAVASNPQIALTAL
LHKLVIDTFQRTSTGGGCLEASVRHVFFPAQAADLKDSPSACAIAERHDAWKADLPQDDQALWDWLSALDDASRLALLAH
CVSFGVNALYEKPNPYGGNGVSQHGLERRLTQADRLARETGLDMVEAGWRPSVDNYLGRVPKRRIVEAVREGAGDRAAQL
IEHLKKAEMAKEAERLLADARWLPEPLRLAHTDTSSEPAEPEAEASSVDLPAFLSGDEEASDEDPEPLPAIAAE
>Mature_713_residues
ATAIQKITLSPSRDIPFNKLTLSQANVRRIKAGISIEELAEDIARRGLLQSLNVRPIIDADGAETGLYEIPAGGRRFRAL
ERLVKQKRLAKTAAVPCVVRDPATSILAEDDSLAENIQRAPLHPLDQFRAFQALRDKGQSEEDIAAAFFTSAHVVKQRLR
LASVSPKLLDIYAADGMTLEQLMAFTVCSDHARQEQVWETIAGSWSKESYQIRRMLTEKTVRASDRRAMFVGLDAYEAAG
GTVLRDLFEQDDGGWLADVALLDTLVAAKLKTEAEAIAAEGWKWIEVAADFPYGHTHGLRQIEGVAAERSADEQATIDAL
NAEYQRLEAEYEGADELPDDVDARLGEIEALLDELDTRPVIFDPCDITRAGVFVSIGADGRLVVDRGCVRPDDEAPLVLP
DDETDGATAATSAQAGEPGPSGTSRTVITVGGQPIESEDDEDDVIKPLPERLVIELTAHRTLALRDAVASNPQIALTALL
HKLVIDTFQRTSTGGGCLEASVRHVFFPAQAADLKDSPSACAIAERHDAWKADLPQDDQALWDWLSALDDASRLALLAHC
VSFGVNALYEKPNPYGGNGVSQHGLERRLTQADRLARETGLDMVEAGWRPSVDNYLGRVPKRRIVEAVREGAGDRAAQLI
EHLKKAEMAKEAERLLADARWLPEPLRLAHTDTSSEPAEPEAEASSVDLPAFLSGDEEASDEDPEPLPAIAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 77730; Mature: 77599

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAIQKITLSPSRDIPFNKLTLSQANVRRIKAGISIEELAEDIARRGLLQSLNVRPIID
CCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEC
ADGAETGLYEIPAGGRRFRALERLVKQKRLAKTAAVPCVVRDPATSILAEDDSLAENIQR
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHCCCHHHHHHHHH
APLHPLDQFRAFQALRDKGQSEEDIAAAFFTSAHVVKQRLRLASVSPKLLDIYAADGMTL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCH
EQLMAFTVCSDHARQEQVWETIAGSWSKESYQIRRMLTEKTVRASDRRAMFVGLDAYEAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHC
GGTVLRDLFEQDDGGWLADVALLDTLVAAKLKTEAEAIAAEGWKWIEVAADFPYGHTHGL
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH
RQIEGVAAERSADEQATIDALNAEYQRLEAEYEGADELPDDVDARLGEIEALLDELDTRP
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
VIFDPCDITRAGVFVSIGADGRLVVDRGCVRPDDEAPLVLPDDETDGATAATSAQAGEPG
EEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
PSGTSRTVITVGGQPIESEDDEDDVIKPLPERLVIELTAHRTLALRDAVASNPQIALTAL
CCCCCCEEEEECCCCCCCCCCCCHHHHCCCHHHEEEHHCCHHHHHHHHHCCCCCHHHHHH
LHKLVIDTFQRTSTGGGCLEASVRHVFFPAQAADLKDSPSACAIAERHDAWKADLPQDDQ
HHHHHHHHHHHCCCCCCHHHHHHHHEECCCHHCCCCCCCCCEEHHHHCCCCCCCCCCCHH
ALWDWLSALDDASRLALLAHCVSFGVNALYEKPNPYGGNGVSQHGLERRLTQADRLARET
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GLDMVEAGWRPSVDNYLGRVPKRRIVEAVREGAGDRAAQLIEHLKKAEMAKEAERLLADA
CCHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RWLPEPLRLAHTDTSSEPAEPEAEASSVDLPAFLSGDEEASDEDPEPLPAIAAE
HCCCCHHHHEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATAIQKITLSPSRDIPFNKLTLSQANVRRIKAGISIEELAEDIARRGLLQSLNVRPIID
CCCCEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEC
ADGAETGLYEIPAGGRRFRALERLVKQKRLAKTAAVPCVVRDPATSILAEDDSLAENIQR
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHCCCHHHHHHHHH
APLHPLDQFRAFQALRDKGQSEEDIAAAFFTSAHVVKQRLRLASVSPKLLDIYAADGMTL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCH
EQLMAFTVCSDHARQEQVWETIAGSWSKESYQIRRMLTEKTVRASDRRAMFVGLDAYEAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHC
GGTVLRDLFEQDDGGWLADVALLDTLVAAKLKTEAEAIAAEGWKWIEVAADFPYGHTHGL
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH
RQIEGVAAERSADEQATIDALNAEYQRLEAEYEGADELPDDVDARLGEIEALLDELDTRP
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
VIFDPCDITRAGVFVSIGADGRLVVDRGCVRPDDEAPLVLPDDETDGATAATSAQAGEPG
EEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
PSGTSRTVITVGGQPIESEDDEDDVIKPLPERLVIELTAHRTLALRDAVASNPQIALTAL
CCCCCCEEEEECCCCCCCCCCCCHHHHCCCHHHEEEHHCCHHHHHHHHHCCCCCHHHHHH
LHKLVIDTFQRTSTGGGCLEASVRHVFFPAQAADLKDSPSACAIAERHDAWKADLPQDDQ
HHHHHHHHHHHCCCCCCHHHHHHHHEECCCHHCCCCCCCCCEEHHHHCCCCCCCCCCCHH
ALWDWLSALDDASRLALLAHCVSFGVNALYEKPNPYGGNGVSQHGLERRLTQADRLARET
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GLDMVEAGWRPSVDNYLGRVPKRRIVEAVREGAGDRAAQLIEHLKKAEMAKEAERLLADA
CCHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RWLPEPLRLAHTDTSSEPAEPEAEASSVDLPAFLSGDEEASDEDPEPLPAIAAE
HCCCCHHHHEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]