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The map label for this gene is yscT [H]

Identifier: 110632474

GI number: 110632474

Start: 139519

End: 140334

Strand: Direct

Name: yscT [H]

Synonym: Meso_0112

Alternate gene names: 110632474

Gene position: 139519-140334 (Clockwise)

Preceding gene: 110632473

Following gene: 110632475

Centisome position: 3.16

GC content: 57.35

Gene sequence:

>816_bases
GTGAAGGAGGCGCTCTCATTCATTGCTCCTGATAACCGCGAATTGCTGGATCTCCTCCTTGCATTCTTGCTGTCGATGAC
GAGGCTCAGCGGTTTTTTTGCCATCTCGCCTTTCTTTTCCCGTAAGAGCATGCCGCGCATCGTCCGCTTCGGCACGATGG
CGGCGATGAGCTTTCCGATCGTATCCAGCCTGGCTGCCGAGGTTGGCACGGAAATCGCCAGGCAAGGCGGGGCGCTCCCC
TCTTATCCGGTTCTGATCGTGAAGGAACTGGCGTTGGGGCTCTTTCTAGGCACGCTCGTCTGGTTGCCGATCCGCGGCTT
GGAACTGGCGGGCGTAATCCTCGACACGCAGCGCGGAAGCACGCAGGCGGAGGATTACGATGTGGTCTTCTCCGCTCAAA
CGACACCGACGGCGATCTTCCTCTCACAGCTTTTCGCAGGCTTCTTTTTCGCCGCGGGTGGCTTCCTGATGGTCATGACG
ATATTTTATCAGAGCATCGCGATATGGCCGCCGATGGATCTGCTTCCCGCCTTCACGCGGGAGACGCTTCTCCTCTTCGT
CCGCTTTGCCGGCATGGTTTACTTCACCGCATTGGTGCTGGTGCTGCCGATCTCCGGCTTTATGTTGCTGAGCGACATCT
GCATCGCTTTTCTGGCCCGCTCGGCACCCAGCCTCAACGCTCTGACACTGGGCATGCCCGTTAAATCAGCGGTCCTTCTG
GTCATGCTGATTTTCTACATTGCCCTCCTTTATCCCAAGCTCTGGGAGACAGTGGCCGGTTCTTTGGTACTGATGCAGCA
GGTTCTCGGATTATGA

Upstream 100 bases:

>100_bases
CTGCCGTGGTGCTGATCCTGTCCTTTTCCATCGGAGGAATGTCATCCCATTTGCTGAGTCTTTTCGAGCAGGTGATGAAC
GAGATCTTGAGGATCTGACA

Downstream 100 bases:

>100_bases
GCGGCGAAAAGACGGAAGCCCCGACGCCGCGCAGGCTCGAGGAGCGGCGCAGGGAAGGGCAGGTCCCCCAACGAAAAAAT
ATTATCGAAGCTGCCCTGCT

Product: type III secretion protein SpaR/YscT/HrcT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKEALSFIAPDNRELLDLLLAFLLSMTRLSGFFAISPFFSRKSMPRIVRFGTMAAMSFPIVSSLAAEVGTEIARQGGALP
SYPVLIVKELALGLFLGTLVWLPIRGLELAGVILDTQRGSTQAEDYDVVFSAQTTPTAIFLSQLFAGFFFAAGGFLMVMT
IFYQSIAIWPPMDLLPAFTRETLLLFVRFAGMVYFTALVLVLPISGFMLLSDICIAFLARSAPSLNALTLGMPVKSAVLL
VMLIFYIALLYPKLWETVAGSLVLMQQVLGL

Sequences:

>Translated_271_residues
MKEALSFIAPDNRELLDLLLAFLLSMTRLSGFFAISPFFSRKSMPRIVRFGTMAAMSFPIVSSLAAEVGTEIARQGGALP
SYPVLIVKELALGLFLGTLVWLPIRGLELAGVILDTQRGSTQAEDYDVVFSAQTTPTAIFLSQLFAGFFFAAGGFLMVMT
IFYQSIAIWPPMDLLPAFTRETLLLFVRFAGMVYFTALVLVLPISGFMLLSDICIAFLARSAPSLNALTLGMPVKSAVLL
VMLIFYIALLYPKLWETVAGSLVLMQQVLGL
>Mature_271_residues
MKEALSFIAPDNRELLDLLLAFLLSMTRLSGFFAISPFFSRKSMPRIVRFGTMAAMSFPIVSSLAAEVGTEIARQGGALP
SYPVLIVKELALGLFLGTLVWLPIRGLELAGVILDTQRGSTQAEDYDVVFSAQTTPTAIFLSQLFAGFFFAAGGFLMVMT
IFYQSIAIWPPMDLLPAFTRETLLLFVRFAGMVYFTALVLVLPISGFMLLSDICIAFLARSAPSLNALTLGMPVKSAVLL
VMLIFYIALLYPKLWETVAGSLVLMQQVLGL

Specific function: Component of the yop secretion machinery [H]

COG id: COG4791

COG function: function code U; Type III secretory pathway, component EscT

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002010
- InterPro:   IPR006304 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 29618; Mature: 29618

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEALSFIAPDNRELLDLLLAFLLSMTRLSGFFAISPFFSRKSMPRIVRFGTMAAMSFPI
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHH
VSSLAAEVGTEIARQGGALPSYPVLIVKELALGLFLGTLVWLPIRGLELAGVILDTQRGS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEECCCCC
TQAEDYDVVFSAQTTPTAIFLSQLFAGFFFAAGGFLMVMTIFYQSIAIWPPMDLLPAFTR
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ETLLLFVRFAGMVYFTALVLVLPISGFMLLSDICIAFLARSAPSLNALTLGMPVKSAVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
VMLIFYIALLYPKLWETVAGSLVLMQQVLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEALSFIAPDNRELLDLLLAFLLSMTRLSGFFAISPFFSRKSMPRIVRFGTMAAMSFPI
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHH
VSSLAAEVGTEIARQGGALPSYPVLIVKELALGLFLGTLVWLPIRGLELAGVILDTQRGS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEECCCCC
TQAEDYDVVFSAQTTPTAIFLSQLFAGFFFAAGGFLMVMTIFYQSIAIWPPMDLLPAFTR
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ETLLLFVRFAGMVYFTALVLVLPISGFMLLSDICIAFLARSAPSLNALTLGMPVKSAVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
VMLIFYIALLYPKLWETVAGSLVLMQQVLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9746557; 9748454; 11586360 [H]