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The map label for this gene is mmgC [H]

Identifier: 110632385

GI number: 110632385

Start: 24470

End: 26266

Strand: Reverse

Name: mmgC [H]

Synonym: Meso_0023

Alternate gene names: 110632385

Gene position: 26266-24470 (Counterclockwise)

Preceding gene: 110632386

Following gene: 110632384

Centisome position: 0.6

GC content: 61.83

Gene sequence:

>1797_bases
ATGACCATCTACAGGGCGCCCGTGCGGGAGACCGCTTTTGTTATCCGCGATTTGCTGAATTATCAGCGCTACGGAAATAT
TGCCGGGTTCAGCGACATTTCGCCGGACATACTCGAAGCGATCCTGGACGAAGGCGCCAAGCTTGCAGAAAACGTGATGC
AGCCGCTCAATCGTGTGGGCGACATGGAGGGCTGCACGCGCCGCGAGGACGGCTCGGTTGTCACCCCGAAGGGCTTCAAG
GCAGCGTACCGTCAATATTGCGAAGGCGGCTGGATGGGCCTCTCCGCGCCTGCGGAATATGGCGGCCAGGGGCTGCCCTA
TCTGGTGCATACGGCGGTAGGAGAATATCTCTCCTCCGCCAATATGGCGCTGATGATGTATCCGGGGCTCACGCAGGGGG
CTATCGCCGCCATTCTCGCGCACGGCACGGACGAGCAGAAGAAAACCTATCTGCCCAGGATGGTGAAGGGTGTCTGGACC
GGCACCATGAACCTGACTGAGCCGCATTGCGGCACGGATCTCGGCCTGCTTCGCACCAAAGCCGTGCCGAACGGCGGCGG
CAGCTACAGGATTTCCGGCCAGAAGATCTTCATCTCCGCCGGCGAGCACGACATGGCCGAGAACATCATTCATCTGGTGC
TGGCCCGCATCGAGGGCGCGCCGGAAGGCACCAAGGGCATCTCTCTTTTCATCGTACCGAAGCTCAAGCTCGACGACGCC
GGCAATCCCGCCGGCCCGAACGGCGTCTCCTGCGGCTCCATCGAGGAGAAGATGGGCATCCACGGCAACGCCACCTGCGT
CATGAATTACGACGAGGCAGAAGGCTTCCTCCTGGGCGCGGAAAATGGCGGGCTGAAGGCCATGTTCACGATGATGAACG
AGGCGCGGCTGGGCGTGGCGCTCCAGGGCCTCGCCGTCGCCGAAGCCGCCTACCAGAATGCTGCCAATTATGCGCGCGAG
CGGCTTCAAGGCCGCTCCCTTTCTGGTGCCAAGGCGCCGGATAAAAAGGCCGATCCCATTATCGTCCACCCGGATGTCCG
ACGAAACCTGATGACGATTCGAGCCTTCAATGAAGCAGGGCGGGCGCTCCTCCTCTGGACGGCTCTGCAATCCGACATCG
CCCATAGCAGCGAGGATGAGCAGGCGCGGCAACTGGCCGAAGACTATCTCGCATTGATGACGCCGGTGTTGAAGGGCGTG
CTAACCGACAAAGGATTCGAGCACGCGGTGATGGCGCAACAGGTCTTCGGCGGCCACGGCTACATCGAAGAGCAGGGCAT
GAGCCAGTTCGTGCGTGATGCGCGGATCGCCATGATCTACGAGGGCGCCAATGGCATCCAGGCGCTCGATCTCGTCGGCC
GTAAACTCCCACAGGACGGCGGCCGCGCGGTGCAGGCATTCTTCAAGATCGTGGGCGATTTCTGCGAGGAGCACCGCTCC
GACGAGAAAATGGCGCCCTACACAAAGGCGCTCAAGAAGGGGCTCAACGACCTGCAGGCGGCAACGCTATGGCTCATGCA
GAACGCGGTGCAAAGGCCGGAAAATGCCGGAGCCGCCGCCTATGATTACATGCATCTCTTCGGCCTCGTGGCGCTCGGCT
TCATGTGGAGCCGCATGGTCAGGACAGCCCAGAATCAATTGACGGCAGGGGCCGGCGGCAACGCGGAGTTCCTGGAGCAG
AAGCTGCTTCTTGGCCGCTTTTTCATGGAGCGGTCGATGCCGGAAACGGCGGCGCATCTGGCGCGGATTTCCTCCGGCTC
CGAGACGATGATGGCTATGACCGAAGCGGCGTTCTAG

Upstream 100 bases:

>100_bases
GGAACTTCTGTCCGTGGATTGAATTTGACGTTTACGCGCACGTCAATATTTGCTATCTATCATTGCCGCGTCGTTCACCG
GTACGTCCAGGAGCAGCAGC

Downstream 100 bases:

>100_bases
AGTAGCGCGAGCAGGTAAGGATCGAGGAGACGGGAATGCCTGATGCCTATGTCTACGATGCGGTGCGAAGCCCGCGCGGC
CGCGGCAAAAAGGACGGCGC

Product: acyl-CoA dehydrogenase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 598; Mature: 597

Protein sequence:

>598_residues
MTIYRAPVRETAFVIRDLLNYQRYGNIAGFSDISPDILEAILDEGAKLAENVMQPLNRVGDMEGCTRREDGSVVTPKGFK
AAYRQYCEGGWMGLSAPAEYGGQGLPYLVHTAVGEYLSSANMALMMYPGLTQGAIAAILAHGTDEQKKTYLPRMVKGVWT
GTMNLTEPHCGTDLGLLRTKAVPNGGGSYRISGQKIFISAGEHDMAENIIHLVLARIEGAPEGTKGISLFIVPKLKLDDA
GNPAGPNGVSCGSIEEKMGIHGNATCVMNYDEAEGFLLGAENGGLKAMFTMMNEARLGVALQGLAVAEAAYQNAANYARE
RLQGRSLSGAKAPDKKADPIIVHPDVRRNLMTIRAFNEAGRALLLWTALQSDIAHSSEDEQARQLAEDYLALMTPVLKGV
LTDKGFEHAVMAQQVFGGHGYIEEQGMSQFVRDARIAMIYEGANGIQALDLVGRKLPQDGGRAVQAFFKIVGDFCEEHRS
DEKMAPYTKALKKGLNDLQAATLWLMQNAVQRPENAGAAAYDYMHLFGLVALGFMWSRMVRTAQNQLTAGAGGNAEFLEQ
KLLLGRFFMERSMPETAAHLARISSGSETMMAMTEAAF

Sequences:

>Translated_598_residues
MTIYRAPVRETAFVIRDLLNYQRYGNIAGFSDISPDILEAILDEGAKLAENVMQPLNRVGDMEGCTRREDGSVVTPKGFK
AAYRQYCEGGWMGLSAPAEYGGQGLPYLVHTAVGEYLSSANMALMMYPGLTQGAIAAILAHGTDEQKKTYLPRMVKGVWT
GTMNLTEPHCGTDLGLLRTKAVPNGGGSYRISGQKIFISAGEHDMAENIIHLVLARIEGAPEGTKGISLFIVPKLKLDDA
GNPAGPNGVSCGSIEEKMGIHGNATCVMNYDEAEGFLLGAENGGLKAMFTMMNEARLGVALQGLAVAEAAYQNAANYARE
RLQGRSLSGAKAPDKKADPIIVHPDVRRNLMTIRAFNEAGRALLLWTALQSDIAHSSEDEQARQLAEDYLALMTPVLKGV
LTDKGFEHAVMAQQVFGGHGYIEEQGMSQFVRDARIAMIYEGANGIQALDLVGRKLPQDGGRAVQAFFKIVGDFCEEHRS
DEKMAPYTKALKKGLNDLQAATLWLMQNAVQRPENAGAAAYDYMHLFGLVALGFMWSRMVRTAQNQLTAGAGGNAEFLEQ
KLLLGRFFMERSMPETAAHLARISSGSETMMAMTEAAF
>Mature_597_residues
TIYRAPVRETAFVIRDLLNYQRYGNIAGFSDISPDILEAILDEGAKLAENVMQPLNRVGDMEGCTRREDGSVVTPKGFKA
AYRQYCEGGWMGLSAPAEYGGQGLPYLVHTAVGEYLSSANMALMMYPGLTQGAIAAILAHGTDEQKKTYLPRMVKGVWTG
TMNLTEPHCGTDLGLLRTKAVPNGGGSYRISGQKIFISAGEHDMAENIIHLVLARIEGAPEGTKGISLFIVPKLKLDDAG
NPAGPNGVSCGSIEEKMGIHGNATCVMNYDEAEGFLLGAENGGLKAMFTMMNEARLGVALQGLAVAEAAYQNAANYARER
LQGRSLSGAKAPDKKADPIIVHPDVRRNLMTIRAFNEAGRALLLWTALQSDIAHSSEDEQARQLAEDYLALMTPVLKGVL
TDKGFEHAVMAQQVFGGHGYIEEQGMSQFVRDARIAMIYEGANGIQALDLVGRKLPQDGGRAVQAFFKIVGDFCEEHRSD
EKMAPYTKALKKGLNDLQAATLWLMQNAVQRPENAGAAAYDYMHLFGLVALGFMWSRMVRTAQNQLTAGAGGNAEFLEQK
LLLGRFFMERSMPETAAHLARISSGSETMMAMTEAAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=372, Percent_Identity=27.9569892473118, Blast_Score=121, Evalue=2e-27,
Organism=Homo sapiens, GI226958412, Length=389, Percent_Identity=25.706940874036, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI226958414, Length=383, Percent_Identity=25.8485639686684, Blast_Score=109, Evalue=8e-24,
Organism=Homo sapiens, GI4557233, Length=381, Percent_Identity=28.0839895013123, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI7656849, Length=380, Percent_Identity=26.8421052631579, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4557235, Length=378, Percent_Identity=26.7195767195767, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI21361497, Length=365, Percent_Identity=25.7534246575342, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI76496475, Length=378, Percent_Identity=26.7195767195767, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI4501857, Length=377, Percent_Identity=25.1989389920424, Blast_Score=87, Evalue=6e-17,
Organism=Homo sapiens, GI4503943, Length=355, Percent_Identity=26.4788732394366, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI7669494, Length=210, Percent_Identity=30.4761904761905, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI87082384, Length=337, Percent_Identity=27.5964391691395, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1786223, Length=389, Percent_Identity=24.1645244215938, Blast_Score=72, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508101, Length=408, Percent_Identity=27.4509803921569, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17538396, Length=381, Percent_Identity=25.4593175853018, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17506239, Length=419, Percent_Identity=25.5369928400955, Blast_Score=100, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17569725, Length=382, Percent_Identity=28.0104712041885, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71985184, Length=414, Percent_Identity=26.3285024154589, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17534899, Length=375, Percent_Identity=27.7333333333333, Blast_Score=95, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17533517, Length=380, Percent_Identity=25.2631578947368, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI86563381, Length=518, Percent_Identity=26.0617760617761, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI86563383, Length=518, Percent_Identity=26.0617760617761, Blast_Score=94, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71990804, Length=240, Percent_Identity=29.5833333333333, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71985192, Length=292, Percent_Identity=28.0821917808219, Blast_Score=86, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17551932, Length=368, Percent_Identity=25.5434782608696, Blast_Score=83, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI32563615, Length=236, Percent_Identity=26.271186440678, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17505929, Length=376, Percent_Identity=25.2659574468085, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356377, Length=382, Percent_Identity=27.7486910994764, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24666513, Length=421, Percent_Identity=27.3159144893112, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI281363737, Length=427, Percent_Identity=26.463700234192, Blast_Score=105, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21355753, Length=383, Percent_Identity=26.6318537859008, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24646207, Length=370, Percent_Identity=26.4864864864865, Blast_Score=102, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24660351, Length=379, Percent_Identity=26.1213720316623, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 64825; Mature: 64694

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYRAPVRETAFVIRDLLNYQRYGNIAGFSDISPDILEAILDEGAKLAENVMQPLNRVG
CCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHC
DMEGCTRREDGSVVTPKGFKAAYRQYCEGGWMGLSAPAEYGGQGLPYLVHTAVGEYLSSA
CCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCC
NMALMMYPGLTQGAIAAILAHGTDEQKKTYLPRMVKGVWTGTMNLTEPHCGTDLGLLRTK
CEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCC
AVPNGGGSYRISGQKIFISAGEHDMAENIIHLVLARIEGAPEGTKGISLFIVPKLKLDDA
CCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCC
GNPAGPNGVSCGSIEEKMGIHGNATCVMNYDEAEGFLLGAENGGLKAMFTMMNEARLGVA
CCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
LQGLAVAEAAYQNAANYARERLQGRSLSGAKAPDKKADPIIVHPDVRRNLMTIRAFNEAG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHEEEHHHCC
RALLLWTALQSDIAHSSEDEQARQLAEDYLALMTPVLKGVLTDKGFEHAVMAQQVFGGHG
CEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
YIEEQGMSQFVRDARIAMIYEGANGIQALDLVGRKLPQDGGRAVQAFFKIVGDFCEEHRS
CCHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
DEKMAPYTKALKKGLNDLQAATLWLMQNAVQRPENAGAAAYDYMHLFGLVALGFMWSRMV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RTAQNQLTAGAGGNAEFLEQKLLLGRFFMERSMPETAAHLARISSGSETMMAMTEAAF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TIYRAPVRETAFVIRDLLNYQRYGNIAGFSDISPDILEAILDEGAKLAENVMQPLNRVG
CEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHC
DMEGCTRREDGSVVTPKGFKAAYRQYCEGGWMGLSAPAEYGGQGLPYLVHTAVGEYLSSA
CCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCC
NMALMMYPGLTQGAIAAILAHGTDEQKKTYLPRMVKGVWTGTMNLTEPHCGTDLGLLRTK
CEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCC
AVPNGGGSYRISGQKIFISAGEHDMAENIIHLVLARIEGAPEGTKGISLFIVPKLKLDDA
CCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCC
GNPAGPNGVSCGSIEEKMGIHGNATCVMNYDEAEGFLLGAENGGLKAMFTMMNEARLGVA
CCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
LQGLAVAEAAYQNAANYARERLQGRSLSGAKAPDKKADPIIVHPDVRRNLMTIRAFNEAG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHEEEHHHCC
RALLLWTALQSDIAHSSEDEQARQLAEDYLALMTPVLKGVLTDKGFEHAVMAQQVFGGHG
CEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
YIEEQGMSQFVRDARIAMIYEGANGIQALDLVGRKLPQDGGRAVQAFFKIVGDFCEEHRS
CCHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
DEKMAPYTKALKKGLNDLQAATLWLMQNAVQRPENAGAAAYDYMHLFGLVALGFMWSRMV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RTAQNQLTAGAGGNAEFLEQKLLLGRFFMERSMPETAAHLARISSGSETMMAMTEAAF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8759838; 8969508; 9384377 [H]