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The map label for this gene is rbn fragment

Identifier: 109948247

GI number: 109948247

Start: 1549692

End: 1550180

Strand: Reverse

Name: rbn fragment

Synonym: Hac_1784

Alternate gene names: NA

Gene position: 1550180-1549692 (Counterclockwise)

Preceding gene: 109948248

Following gene: 109948242

Centisome position: 99.76

GC content: 40.9

Gene sequence:

>489_bases
TTGAAAAACGCCTTTTGGGGGTTAAGCGAGTTGTTTTACTACGCTTCAAGCTTGAGTTTTTACACGATTTTGTCCTTATC
GCCCATTTTGTTGTTTGTGTTCAGTCTTTTTGTGTCTGATTACATGCAAGCGCACAGCGGTGAAGTGGAAGCCTTGATTT
TCCCTAACGCCCCCAAACTCATTGGCGCGATCAAGGATTTTTTGGAAAACTTTAAAAAAACCAATACGGCATTAGGCACT
CTTGAAGCGGTGTCTATTGTGGTGGCGTTGGTGTTGTTTTGTGAAAATTACCGATCCATTGCATCCAAGATTTTTGATGC
AAAGCCTAGGGATTATGCGCGTTGCAGAGGTAAAGAAATCTTTTTGTTTTGGGGGTTTGGCACGACTTTAGTGTTTTTAT
TCGCTTTGCCTTTGGTGGTGGTTAGAAAATTCTTTTTTATGCTCATAAGCTTTTCTAATGTAAGGGGCAAACCCAAAGGG
GTTTTCTAA

Upstream 100 bases:

>100_bases
CTTATGGCTTGAAAATGGCGGCAAGCTGTCATTAATGAGAGAACTTTTTAAAAGCATCAGAGGGTTTTTGTGCCTTCTTA
AAATGATTTTCCCCCAGCGC

Downstream 100 bases:

>100_bases
ATTTTTCAAGGCGTTTTTCAAACTTTCTTCATCTTTATCTAAATTATCAAAATACTTGAGTAAAACTTCTCTGGTTTCAT
GACTCAAAATATCTGATCCT

Product: ribonuclease N fragment

Products: NA

Alternate protein names: TRNA-Processing Ribonuclease BN; Ribonuclease N; Ribonuclease N Fragment

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKLIGAIKDFLENFKKTNTALGT
LEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEIFLFWGFGTTLVFLFALPLVVVRKFFFMLISFSNVRGKPKG
VF

Sequences:

>Translated_162_residues
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKLIGAIKDFLENFKKTNTALGT
LEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEIFLFWGFGTTLVFLFALPLVVVRKFFFMLISFSNVRGKPKG
VF
>Mature_162_residues
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKLIGAIKDFLENFKKTNTALGT
LEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEIFLFWGFGTTLVFLFALPLVVVRKFFFMLISFSNVRGKPKG
VF

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18364; Mature: 18364

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
IGAIKDFLENFKKTNTALGTLEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEE
FLFWGFGTTLVFLFALPLVVVRKFFFMLISFSNVRGKPKGVF
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
IGAIKDFLENFKKTNTALGTLEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEE
FLFWGFGTTLVFLFALPLVVVRKFFFMLISFSNVRGKPKGVF
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA