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The map label for this gene is rpe [H]

Identifier: 109948242

GI number: 109948242

Start: 1546412

End: 1547065

Strand: Reverse

Name: rpe [H]

Synonym: Hac_1779

Alternate gene names: 109948242

Gene position: 1547065-1546412 (Counterclockwise)

Preceding gene: 109948247

Following gene: 109948241

Centisome position: 99.56

GC content: 39.91

Gene sequence:

>654_bases
TTGAAAGTAGCCCCAAGCCTTTTGAGCGCTGATTTTATGCATTTAGCCAAAGAGTTAGAGAGTGTGAGTAGTGCTGATTT
TTTGCATGTGGATGTGATGGATGGGCATTATGTGCCTAATTTAACGATGGGTCCTGTGATTTTAGAAAATGTTACCCGAA
TGAGCAAAGTGCCTTTAGATGTGCATTTAATGGTAGAAAATGCGAGCTTTTTTGTAGAGTTATTCGCCCCTTTAAAGCCA
GAAATCATCAGCATTCATGCAGAAAATGAAAAACACCCCCACAGAGTGTTGCAACTCATTAAAAGTTTAGGCATCACGCC
AGGAATTGTCTTAAACCCTCACACGCATGAAGAAAGCGTTAAATACTTGCTAGAAAGCGTGGGATTAGTGCTTTTAATGA
GCGTGAATCCGGGCTTTGGCGGACAGAAGTTTTTAGATTTAGTGCTAGAAAAATGCTTGAAAGTCAAAGAGTTGATCAAG
CGCTACAACCCTAGCTGTCTTTTAGAAGTGGATGGGGGCGTGAATGATCAAAATATCTTTGAACTCCAACAAGCGGATGT
GGACATTGTGGTTTCAGGGAGTTATATTTTTAAATCTAAAGATCGTAAGCTAGCTATTGAAGGCTTACAGAATGCCAATA
AATCTCTTGCATAA

Upstream 100 bases:

>100_bases
TGCACGCCTTTAAAATGTTTGTAATCCATGAAAAACCCTTTTATGATTTGATTAAAGATGCTAATATTTTACTTGAAAAC
ATTGAAAATAGGGAAGTATT

Downstream 100 bases:

>100_bases
AGATATTCAAGCCCTAATCGCTCGCTTAAAAAACCAGGATTTAAGCTTGGGTATGCTAGAAAAATCGCTCTCTCGCCTTA
TCTATGATGAAATCAATTTG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKVAPSLLSADFMHLAKELESVSSADFLHVDVMDGHYVPNLTMGPVILENVTRMSKVPLDVHLMVENASFFVELFAPLKP
EIISIHAENEKHPHRVLQLIKSLGITPGIVLNPHTHEESVKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIK
RYNPSCLLEVDGGVNDQNIFELQQADVDIVVSGSYIFKSKDRKLAIEGLQNANKSLA

Sequences:

>Translated_217_residues
MKVAPSLLSADFMHLAKELESVSSADFLHVDVMDGHYVPNLTMGPVILENVTRMSKVPLDVHLMVENASFFVELFAPLKP
EIISIHAENEKHPHRVLQLIKSLGITPGIVLNPHTHEESVKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIK
RYNPSCLLEVDGGVNDQNIFELQQADVDIVVSGSYIFKSKDRKLAIEGLQNANKSLA
>Mature_217_residues
MKVAPSLLSADFMHLAKELESVSSADFLHVDVMDGHYVPNLTMGPVILENVTRMSKVPLDVHLMVENASFFVELFAPLKP
EIISIHAENEKHPHRVLQLIKSLGITPGIVLNPHTHEESVKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIK
RYNPSCLLEVDGGVNDQNIFELQQADVDIVVSGSYIFKSKDRKLAIEGLQNANKSLA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=33.1775700934579, Blast_Score=127, Evalue=8e-30,
Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=33.1775700934579, Blast_Score=120, Evalue=6e-28,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=26.6272189349112, Blast_Score=71, Evalue=7e-13,
Organism=Escherichia coli, GI1789788, Length=212, Percent_Identity=42.9245283018868, Blast_Score=168, Evalue=2e-43,
Organism=Escherichia coli, GI1790523, Length=196, Percent_Identity=33.1632653061224, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1790754, Length=208, Percent_Identity=29.8076923076923, Blast_Score=103, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17552948, Length=217, Percent_Identity=37.3271889400922, Blast_Score=130, Evalue=7e-31,
Organism=Saccharomyces cerevisiae, GI6322341, Length=214, Percent_Identity=33.6448598130841, Blast_Score=131, Evalue=8e-32,
Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24050; Mature: 24050

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVAPSLLSADFMHLAKELESVSSADFLHVDVMDGHYVPNLTMGPVILENVTRMSKVPLD
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCE
VHLMVENASFFVELFAPLKPEIISIHAENEKHPHRVLQLIKSLGITPGIVLNPHTHEESV
EEEEEECCCEEHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHH
KYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDQNIF
HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ELQQADVDIVVSGSYIFKSKDRKLAIEGLQNANKSLA
HHHHCCEEEEEECCEEEECCCCEEEHHHHHCCCCCCC
>Mature Secondary Structure
MKVAPSLLSADFMHLAKELESVSSADFLHVDVMDGHYVPNLTMGPVILENVTRMSKVPLD
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCE
VHLMVENASFFVELFAPLKPEIISIHAENEKHPHRVLQLIKSLGITPGIVLNPHTHEESV
EEEEEECCCEEHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHH
KYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDQNIF
HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ELQQADVDIVVSGSYIFKSKDRKLAIEGLQNANKSLA
HHHHCCEEEEEECCEEEECCCCEEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]