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The map label for this gene is ybhS [C]

Identifier: 109948213

GI number: 109948213

Start: 1520093

End: 1521223

Strand: Reverse

Name: ybhS [C]

Synonym: Hac_1746

Alternate gene names: 109948213

Gene position: 1521223-1520093 (Counterclockwise)

Preceding gene: 109948214

Following gene: 109948212

Centisome position: 97.9

GC content: 39.79

Gene sequence:

>1131_bases
ATGAATTTTTTTAAAATCCTTTTGATGGAGTTAAGGGCTATTGTTTCTCATAAGGGCGTTTTGTTGATCCTTATAGGCGC
TCCCTTAATCTATGGCTTATTATACCCCTTGCCTTATTTAAGAGATGTTGTCACGCAGCAAAAAATCGCCCTTGTAGATG
AAGACAATTCCTTTCTTTCTAGGCGATTAGCCTTCATGGCGCAAAGTTCCAACGAATTAGAGATCGCTTTTTTTAGCCCC
TCTATGTTAGAAGCCAAAAAGCTTTTAAAAGAAGAAAAAATTTATGGGATCTTGCACATCCCTTCGCATTTTGAAGCCAA
TATCCACAAGCAAGTGCCTGTAACAATCGATCTTTACGCCAATTCCAATTACTTTTTGATTTATGGCGCGTTAGCGAATG
CGATTGTGGAGAGCATTAACGCTTTAAATGAGGAAATCAGGTTTAAACGCAACGCCCAAATAGAAGAAGCCGAGTTGGGG
ACAGATGGGATTAAAATCAGACCCATCGCCTTGTATAACCCTAGTGAAGGCTATTTGAATTATGCGCTCTCTAGCGTGTT
TATTTTCATTTTGCACCAGGTGATGCTCATTGCAAGTAGCATGTTTGCTAGCTCTAATCGTTTGGAATTAGCCTTTTTAG
ATAAGAAACAAATCGCTTTAAGGCTGTGTGCAAGGCTCTTGATTTTTATGGGAGCGTTTAGCGTTTTTATTTTATGGTAT
TTTGGGGCGCTGTTTTCTGCCTATGGGATCGAACGGCATGCGAGCGCTTTGGCGGTGTTTTTGAATAGCTTGATTTTCAT
GCTTGCAACCTTGAGTTTGGGGTCGTTTTTAGGTGCATGGATTAAAAATGAAGCCCACACCACTCAAATCATTTTGATTT
CTTCTTTGCCCTTGATTTTTATGATGGGTTTTGTATGGCCTTTTGAATCCTTGCCCTCTTATTTGCAAGCTTTTGTTCAA
ACAGTGCCAGCCTACCATGGGATTAGTTTGTTAGGGCACTTGAATCAAATGCATGCCGAATTTATGGATGTGTCCATCCA
TTTTTATGCGCTTATTGTGATTTTTATGGTGGGTTTTATAGGGAGTGTGTTCAAACTCAGCTCGTTAAAGAAAGCTTGTG
AAAACGCTTAA

Upstream 100 bases:

>100_bases
AGTCTTTGCGTTCGTTAATACCGCTTTTTGTTTTTTTAATCTTTTTGGCTTTAGGGCTTTTGGTTTTTTATTTTTCTTTC
AAAAAAGACAGGGTTAATGC

Downstream 100 bases:

>100_bases
AACATTAATCGCTTCCAAGCACCAGACTAAAGCGTCTCGTTTTTTAGGGTATCTTGTGCCTTTTAATGATTTTGAAAAAA
CCCTTTTAACATTGAAAAAA

Product: ABC transporter permease

Products: NA

Alternate protein names: ABC-Type Multidrug Transport System Permease Component; ABC-Type Multidrug Transport System Protein; ABC Transporter Permease; ABC-2 Type Transport System Permease Protein; Conserved Transporter; Transport-Related Membrane Protein; ABC-2 Type Transporter Superfamily; ABC-2 Type Transport System Permease; Integral Membrane Protein; Multidrug ABC Transporter Permease Component; ABC-2 Type Transporter Domain Protein; Abc-2 Type Transporter; Multidrug ABC Transporter Permease Protein; ABC-2 Type Transporter Family; ABC Transporter Transmembrane Protein; Permease Component Of ABC Transporter; Antibiotic Transport System Permease Protein

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MNFFKILLMELRAIVSHKGVLLILIGAPLIYGLLYPLPYLRDVVTQQKIALVDEDNSFLSRRLAFMAQSSNELEIAFFSP
SMLEAKKLLKEEKIYGILHIPSHFEANIHKQVPVTIDLYANSNYFLIYGALANAIVESINALNEEIRFKRNAQIEEAELG
TDGIKIRPIALYNPSEGYLNYALSSVFIFILHQVMLIASSMFASSNRLELAFLDKKQIALRLCARLLIFMGAFSVFILWY
FGALFSAYGIERHASALAVFLNSLIFMLATLSLGSFLGAWIKNEAHTTQIILISSLPLIFMMGFVWPFESLPSYLQAFVQ
TVPAYHGISLLGHLNQMHAEFMDVSIHFYALIVIFMVGFIGSVFKLSSLKKACENA

Sequences:

>Translated_376_residues
MNFFKILLMELRAIVSHKGVLLILIGAPLIYGLLYPLPYLRDVVTQQKIALVDEDNSFLSRRLAFMAQSSNELEIAFFSP
SMLEAKKLLKEEKIYGILHIPSHFEANIHKQVPVTIDLYANSNYFLIYGALANAIVESINALNEEIRFKRNAQIEEAELG
TDGIKIRPIALYNPSEGYLNYALSSVFIFILHQVMLIASSMFASSNRLELAFLDKKQIALRLCARLLIFMGAFSVFILWY
FGALFSAYGIERHASALAVFLNSLIFMLATLSLGSFLGAWIKNEAHTTQIILISSLPLIFMMGFVWPFESLPSYLQAFVQ
TVPAYHGISLLGHLNQMHAEFMDVSIHFYALIVIFMVGFIGSVFKLSSLKKACENA
>Mature_376_residues
MNFFKILLMELRAIVSHKGVLLILIGAPLIYGLLYPLPYLRDVVTQQKIALVDEDNSFLSRRLAFMAQSSNELEIAFFSP
SMLEAKKLLKEEKIYGILHIPSHFEANIHKQVPVTIDLYANSNYFLIYGALANAIVESINALNEEIRFKRNAQIEEAELG
TDGIKIRPIALYNPSEGYLNYALSSVFIFILHQVMLIASSMFASSNRLELAFLDKKQIALRLCARLLIFMGAFSVFILWY
FGALFSAYGIERHASALAVFLNSLIFMLATLSLGSFLGAWIKNEAHTTQIILISSLPLIFMMGFVWPFESLPSYLQAFVQ
TVPAYHGISLLGHLNQMHAEFMDVSIHFYALIVIFMVGFIGSVFKLSSLKKACENA

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42333; Mature: 42333

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFFKILLMELRAIVSHKGVLLILIGAPLIYGLLYPLPYLRDVVTQQKIALVDEDNSFLS
CHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHEEEEECCHHHHH
RRLAFMAQSSNELEIAFFSPSMLEAKKLLKEEKIYGILHIPSHFEANIHKQVPVTIDLYA
HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEEE
NSNYFLIYGALANAIVESINALNEEIRFKRNAQIEEAELGTDGIKIRPIALYNPSEGYLN
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEEEECCCCHHHH
YALSSVFIFILHQVMLIASSMFASSNRLELAFLDKKQIALRLCARLLIFMGAFSVFILWY
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
FGALFSAYGIERHASALAVFLNSLIFMLATLSLGSFLGAWIKNEAHTTQIILISSLPLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHH
MMGFVWPFESLPSYLQAFVQTVPAYHGISLLGHLNQMHAEFMDVSIHFYALIVIFMVGFI
HHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSVFKLSSLKKACENA
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNFFKILLMELRAIVSHKGVLLILIGAPLIYGLLYPLPYLRDVVTQQKIALVDEDNSFLS
CHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHEEEEECCHHHHH
RRLAFMAQSSNELEIAFFSPSMLEAKKLLKEEKIYGILHIPSHFEANIHKQVPVTIDLYA
HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEEE
NSNYFLIYGALANAIVESINALNEEIRFKRNAQIEEAELGTDGIKIRPIALYNPSEGYLN
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEEEECCCCHHHH
YALSSVFIFILHQVMLIASSMFASSNRLELAFLDKKQIALRLCARLLIFMGAFSVFILWY
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
FGALFSAYGIERHASALAVFLNSLIFMLATLSLGSFLGAWIKNEAHTTQIILISSLPLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHH
MMGFVWPFESLPSYLQAFVQTVPAYHGISLLGHLNQMHAEFMDVSIHFYALIVIFMVGFI
HHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSVFKLSSLKKACENA
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA