Definition Helicobacter acinonychis str. Sheeba chromosome, complete genome.
Accession NC_008229
Length 1,553,927

Click here to switch to the map view.

The map label for this gene is 109947948

Identifier: 109947948

GI number: 109947948

Start: 1258704

End: 1259138

Strand: Reverse

Name: 109947948

Synonym: Hac_1451

Alternate gene names: NA

Gene position: 1259138-1258704 (Counterclockwise)

Preceding gene: 109947949

Following gene: 109947947

Centisome position: 81.03

GC content: 40.0

Gene sequence:

>435_bases
ATGAAAAAATTAGCGTTTTCTTTGTTATTGGCGGAATCTTTTTTAGGGCTTTTTTTGAATGCGAGCGATTTTAAGAGCAT
GGATAACAAGCAACTGTTGGAGCAAGCAGGGAAAGTCGCTCCTAGCGAAGTCCCTGAGTTTCGTGCAGAAGTGAGTAAGC
GATTAAAAGCGATGAAAGAAGAAGAGCGTCAAAATTATAAAGCGGATTTCAAAAAAGCGATGGATAAGAATTTAGCTTCT
TTGAGCCAAGAAGATCGCAGTAAGCGTAAAAAAGAAATCCTTGAAGCGATCGCCAATAAAAAGAAAACGATGACGATGAA
AGAATACCGCCAAGAAGGGTTGGATCTGCATGATTGCACATGTGAAGGCCCTTTCCATCATCATGAGAGAAAGGGAAAAA
AAGAGAAGAAAATGAGCCGTCATCAGCATGCTTAA

Upstream 100 bases:

>100_bases
AACTTATTGATATTGCATAAAAATAAAAACTATAAGTTATTTTTAATGGATTAGATGGTAAAATCCTAGCCGTTTCATTA
TTTTGAAATGGGAGTATTTG

Downstream 100 bases:

>100_bases
GGTGTTTTGGTGGGGCGTTTTTGATTTTTAGCGTTAGTTAGGGTTTAAAATATAGAGAAGGTGTTTGTATTTTTTGGATA
TTTATAGTATCATGCCCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKKLAFSLLLAESFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRAEVSKRLKAMKEEERQNYKADFKKAMDKNLAS
LSQEDRSKRKKEILEAIANKKKTMTMKEYRQEGLDLHDCTCEGPFHHHERKGKKEKKMSRHQHA

Sequences:

>Translated_144_residues
MKKLAFSLLLAESFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRAEVSKRLKAMKEEERQNYKADFKKAMDKNLAS
LSQEDRSKRKKEILEAIANKKKTMTMKEYRQEGLDLHDCTCEGPFHHHERKGKKEKKMSRHQHA
>Mature_144_residues
MKKLAFSLLLAESFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRAEVSKRLKAMKEEERQNYKADFKKAMDKNLAS
LSQEDRSKRKKEILEAIANKKKTMTMKEYRQEGLDLHDCTCEGPFHHHERKGKKEKKMSRHQHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16755; Mature: 16755

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLAFSLLLAESFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRAEVSKRLKAMKE
CHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EERQNYKADFKKAMDKNLASLSQEDRSKRKKEILEAIANKKKTMTMKEYRQEGLDLHDCT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
CEGPFHHHERKGKKEKKMSRHQHA
CCCCCHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MKKLAFSLLLAESFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRAEVSKRLKAMKE
CHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EERQNYKADFKKAMDKNLASLSQEDRSKRKKEILEAIANKKKTMTMKEYRQEGLDLHDCT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
CEGPFHHHERKGKKEKKMSRHQHA
CCCCCHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA