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The map label for this gene is omp20 fragment 1

Identifier: 109947799

GI number: 109947799

Start: 1100455

End: 1100892

Strand: Reverse

Name: omp20 fragment 1

Synonym: Hac_1281

Alternate gene names: NA

Gene position: 1100892-1100455 (Counterclockwise)

Preceding gene: 109947801

Following gene: 109947798

Centisome position: 70.85

GC content: 46.58

Gene sequence:

>438_bases
TTGCCAGATGAAAAAACCAATTCTCTTGCATATCAAGCGGCGCTTTTAGCGCTCCATGCAGCGGTGGGGTTGTGGAATGG
GATAGGCTATGCGGTAATGTGCAGAAAGGGGAATGGTAGTGGGTCTAGTAACATGAATTTTGAAGACCAGCCAAGACAAG
AAAGCGCGGCTGTTCAATGCAACCGGTATGAAGCCATAGGAAAAGACAAATCCATGAGCATTGAGAATTTTAAGAAACTC
AATGAAGCCTGTCAAATCATCCAAGCGGCTTCAAAAAACAGGCGAGCGCGATGGTTAGAGCGCTCCAAGACACTTGCCCG
TATGCGCGCCCGCAAAGCGGTAATCATCCAGGTAATGGCTCTCCATGGGGCATTTCAGGAAATAGCAATAACATGCACAA
GATTTTTGGCGCTTATTTCACTGCTGTCTAAAACATGA

Upstream 100 bases:

>100_bases
AGCTGCTCGGTTTCACCCTTAAACAACCTTATCAATCAGCCCAACAGCCCAAACGCCATCAATAAGTGCAAGGGGCAATT
TAGGCTCAAGCGCTAGGAGT

Downstream 100 bases:

>100_bases
TCAGCCGCGCTCAAAAAGTCGTAACGGAAACGAATTGCATTAAAAACGCTTTGAACACCAAGCCCAAAATGCGCCAGCCA
ATGACAACCCCTACACCAAC

Product: outer membrane protein 20 fragment 1

Products: NA

Alternate protein names: Outer Membrane Protein HopZ

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MPDEKTNSLAYQAALLALHAAVGLWNGIGYAVMCRKGNGSGSSNMNFEDQPRQESAAVQCNRYEAIGKDKSMSIENFKKL
NEACQIIQAASKNRRARWLERSKTLARMRARKAVIIQVMALHGAFQEIAITCTRFLALISLLSKT

Sequences:

>Translated_145_residues
MPDEKTNSLAYQAALLALHAAVGLWNGIGYAVMCRKGNGSGSSNMNFEDQPRQESAAVQCNRYEAIGKDKSMSIENFKKL
NEACQIIQAASKNRRARWLERSKTLARMRARKAVIIQVMALHGAFQEIAITCTRFLALISLLSKT
>Mature_144_residues
PDEKTNSLAYQAALLALHAAVGLWNGIGYAVMCRKGNGSGSSNMNFEDQPRQESAAVQCNRYEAIGKDKSMSIENFKKLN
EACQIIQAASKNRRARWLERSKTLARMRARKAVIIQVMALHGAFQEIAITCTRFLALISLLSKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16078; Mature: 15947

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDEKTNSLAYQAALLALHAAVGLWNGIGYAVMCRKGNGSGSSNMNFEDQPRQESAAVQC
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
NRYEAIGKDKSMSIENFKKLNEACQIIQAASKNRRARWLERSKTLARMRARKAVIIQVMA
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHGAFQEIAITCTRFLALISLLSKT
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PDEKTNSLAYQAALLALHAAVGLWNGIGYAVMCRKGNGSGSSNMNFEDQPRQESAAVQC
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
NRYEAIGKDKSMSIENFKKLNEACQIIQAASKNRRARWLERSKTLARMRARKAVIIQVMA
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHGAFQEIAITCTRFLALISLLSKT
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA