Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 109947450

GI number: 109947450

Start: 785261

End: 786484

Strand: Reverse

Name: yebA [C]

Synonym: Hac_0901

Alternate gene names: 109947450

Gene position: 786484-785261 (Counterclockwise)

Preceding gene: 109947453

Following gene: 109947449

Centisome position: 50.61

GC content: 38.24

Gene sequence:

>1224_bases
ATGGTATTTTTTCATAAGAAAATTATTTTAAATTTTATCTATTTTTTAGTGATTGCTTTTTTATCCCATTTATCTTATGG
GGTGTTTTTAAAAGCCGATGAGGTAAAAACGCAAACGCTTAACCCCTTAATGGGCGAAAGGCTTGTGTGGGATAAGCTCA
CGCTGTTAGGGTTTTTGGAAAAAAACCATATCTCGCAAAAACTCTATTACAATTTGAGCTCACAAGATAAAGAATTGAGC
GCTGACATTCAAAGCAATGTGACTTATTACACCTTAAGAGACGCCAATAACACGCTCATTCAAGCCCTTATCCCCGTAAG
CCAGGATTTGCAAATCCATATTTACAAAAAAGGGGAGGATTATTTTTTAAATTTTATCCCCATTATCTTCACTCGTAAAG
AAAAAACCCTCCTTCTTTCGTTGCAAACTTCACCTTATCAAGATATTGTCAAAGCCACTAAAGACCCCCTTTTAGCCAAC
CAATTGATGAACGCATATAAAAAAAGCGTGCCTTTTAAACGATTGGTGAGAAACGATAAAATCGCTATCGTTTATACAAG
GGATTATCGCGTGGGGCAAGCGTTTGGCCAGCCAACTATTAAAATGGCGATGATTGGCTCTCGCTCTAACCAATACTATC
TTTTTTCCCATTCAAACGGACGCTATTATGACTCTAAAGCGCAAGAAGTGGCAGGGTTTTTACTAGAAACCCCAGTGAAA
TACACCCGCATTTCTTCGCCTTTTTCATATGGGAGATACCACCCTATTTTAAAAGTCCGACGGCCTCATTATGGCGTGGA
TTATGCGGCTAAACATGGCAGTTTGATTTATTCTGCTTCAGAGGGTCGTGTGAGTTTTATAGGGGTTAAGGGAGGTTATG
GGAAAGTGGTTGAAATCCATTTGAATGAATTGCGCTTGGTGTATGCTCATATGAGCTCGTTTGCTAAAGGGTTGAAAAAA
GGATCGTTCGTTAAAAAAGGGCAAATTATAGGTAGAGTGGGGAGTACAGGTTTTAGCACCGGACCGCATTTGCATTTTGG
CGTGTATAAAAACTCTCGCCCCATTAATCCTTTAGACTATATTCGCACCGCTAAAAGCAAGTTATACGGCAAACAAAGAG
AGGTTTTTTTAGAAAAAGCCAGACGATCTAAACAAAAATTAGAAGAACTTTTTAAAACCCATTCTTTTGAAACAAATCCA
TTTTATCTTTTAGAGGGCTTTTAA

Upstream 100 bases:

>100_bases
CAAACAAACTAAATCGCACTTTAAACTTGTATCGTTTTTCTTTAATGGCTTATGTTATACTAATAGAATACAGATTTGAT
TGAAGGCATTAAGTAACTGC

Downstream 100 bases:

>100_bases
TGTCTTATTTTAAAAATATTCCCAGCCAACAATCTTTGATCCATTATGCTAGCGTGTCTTTAGAGCCTTGTTCTGGCTCT
CATTATATAGAATTAAAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MVFFHKKIILNFIYFLVIAFLSHLSYGVFLKADEVKTQTLNPLMGERLVWDKLTLLGFLEKNHISQKLYYNLSSQDKELS
ADIQSNVTYYTLRDANNTLIQALIPVSQDLQIHIYKKGEDYFLNFIPIIFTRKEKTLLLSLQTSPYQDIVKATKDPLLAN
QLMNAYKKSVPFKRLVRNDKIAIVYTRDYRVGQAFGQPTIKMAMIGSRSNQYYLFSHSNGRYYDSKAQEVAGFLLETPVK
YTRISSPFSYGRYHPILKVRRPHYGVDYAAKHGSLIYSASEGRVSFIGVKGGYGKVVEIHLNELRLVYAHMSSFAKGLKK
GSFVKKGQIIGRVGSTGFSTGPHLHFGVYKNSRPINPLDYIRTAKSKLYGKQREVFLEKARRSKQKLEELFKTHSFETNP
FYLLEGF

Sequences:

>Translated_407_residues
MVFFHKKIILNFIYFLVIAFLSHLSYGVFLKADEVKTQTLNPLMGERLVWDKLTLLGFLEKNHISQKLYYNLSSQDKELS
ADIQSNVTYYTLRDANNTLIQALIPVSQDLQIHIYKKGEDYFLNFIPIIFTRKEKTLLLSLQTSPYQDIVKATKDPLLAN
QLMNAYKKSVPFKRLVRNDKIAIVYTRDYRVGQAFGQPTIKMAMIGSRSNQYYLFSHSNGRYYDSKAQEVAGFLLETPVK
YTRISSPFSYGRYHPILKVRRPHYGVDYAAKHGSLIYSASEGRVSFIGVKGGYGKVVEIHLNELRLVYAHMSSFAKGLKK
GSFVKKGQIIGRVGSTGFSTGPHLHFGVYKNSRPINPLDYIRTAKSKLYGKQREVFLEKARRSKQKLEELFKTHSFETNP
FYLLEGF
>Mature_407_residues
MVFFHKKIILNFIYFLVIAFLSHLSYGVFLKADEVKTQTLNPLMGERLVWDKLTLLGFLEKNHISQKLYYNLSSQDKELS
ADIQSNVTYYTLRDANNTLIQALIPVSQDLQIHIYKKGEDYFLNFIPIIFTRKEKTLLLSLQTSPYQDIVKATKDPLLAN
QLMNAYKKSVPFKRLVRNDKIAIVYTRDYRVGQAFGQPTIKMAMIGSRSNQYYLFSHSNGRYYDSKAQEVAGFLLETPVK
YTRISSPFSYGRYHPILKVRRPHYGVDYAAKHGSLIYSASEGRVSFIGVKGGYGKVVEIHLNELRLVYAHMSSFAKGLKK
GSFVKKGQIIGRVGSTGFSTGPHLHFGVYKNSRPINPLDYIRTAKSKLYGKQREVFLEKARRSKQKLEELFKTHSFETNP
FYLLEGF

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=222, Percent_Identity=31.5315315315315, Blast_Score=101, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 46850; Mature: 46850

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFFHKKIILNFIYFLVIAFLSHLSYGVFLKADEVKTQTLNPLMGERLVWDKLTLLGFLE
CEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCHHHCCHHHHHHHHHHHHHH
KNHISQKLYYNLSSQDKELSADIQSNVTYYTLRDANNTLIQALIPVSQDLQIHIYKKGED
HHCCCCEEEECCCCCCCHHHHHHHCCEEEEEEECCCCCEEHEECCCCCCCEEEEEECCCC
YFLNFIPIIFTRKEKTLLLSLQTSPYQDIVKATKDPLLANQLMNAYKKSVPFKRLVRNDK
EEEEEEEEEEECCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCC
IAIVYTRDYRVGQAFGQPTIKMAMIGSRSNQYYLFSHSNGRYYDSKAQEVAGFLLETPVK
EEEEEECCCEEHHHCCCCCEEEEEEECCCCEEEEEECCCCCEECCHHHHHHHHHHHCCCH
YTRISSPFSYGRYHPILKVRRPHYGVDYAAKHGSLIYSASEGRVSFIGVKGGYGKVVEIH
HEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCEEEEE
LNELRLVYAHMSSFAKGLKKGSFVKKGQIIGRVGSTGFSTGPHLHFGVYKNSRPINPLDY
ECHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHH
IRTAKSKLYGKQREVFLEKARRSKQKLEELFKTHSFETNPFYLLEGF
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MVFFHKKIILNFIYFLVIAFLSHLSYGVFLKADEVKTQTLNPLMGERLVWDKLTLLGFLE
CEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCHHHCCHHHHHHHHHHHHHH
KNHISQKLYYNLSSQDKELSADIQSNVTYYTLRDANNTLIQALIPVSQDLQIHIYKKGED
HHCCCCEEEECCCCCCCHHHHHHHCCEEEEEEECCCCCEEHEECCCCCCCEEEEEECCCC
YFLNFIPIIFTRKEKTLLLSLQTSPYQDIVKATKDPLLANQLMNAYKKSVPFKRLVRNDK
EEEEEEEEEEECCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCC
IAIVYTRDYRVGQAFGQPTIKMAMIGSRSNQYYLFSHSNGRYYDSKAQEVAGFLLETPVK
EEEEEECCCEEHHHCCCCCEEEEEEECCCCEEEEEECCCCCEECCHHHHHHHHHHHCCCH
YTRISSPFSYGRYHPILKVRRPHYGVDYAAKHGSLIYSASEGRVSFIGVKGGYGKVVEIH
HEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCEEEEE
LNELRLVYAHMSSFAKGLKKGSFVKKGQIIGRVGSTGFSTGPHLHFGVYKNSRPINPLDY
ECHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHH
IRTAKSKLYGKQREVFLEKARRSKQKLEELFKTHSFETNPFYLLEGF
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]