Definition Helicobacter acinonychis str. Sheeba chromosome, complete genome.
Accession NC_008229
Length 1,553,927

Click here to switch to the map view.

The map label for this gene is 109947058

Identifier: 109947058

GI number: 109947058

Start: 403688

End: 404200

Strand: Reverse

Name: 109947058

Synonym: Hac_0456

Alternate gene names: NA

Gene position: 404200-403688 (Counterclockwise)

Preceding gene: 109947059

Following gene: 109947057

Centisome position: 26.01

GC content: 33.72

Gene sequence:

>513_bases
ATGAGATTTAAGAGTGTTGTTGCTTTTATCTCTTTAGCTGCCGCTCTTGGCGTTTTAGCCTATTTGTTTTTGAGCGTTAA
AAAAGAAATCCCCACCGTCTCTTTTATAAACAAAAACCCATCTCAAACAGAAAAAAGCCATGACATTAACCTAGAAGAAA
CCCCTAATAACCCTAATGAAAGTGCTAATAACCCCCATAACGAAGAAACCCATAACAACACCCTTTCTCAAAACCTTGAT
GCACAAGATTCCATCAATTACCCTGTCATAGAACATCATTTTGAAGTCCCTTTTGAAGAGGGAAAAAGGGAATATTCAAA
GCTTATCATTAAGGATTTAAAGGATTATCAATTCTTGTGCTTGAAAGAAATCCTCAAAAAAGAACAAATTGATTACGCTT
ATGATAACACCAACAACCAATCTAATCTCATCGTCTATTTAGATGAAAATAAAAAAGAACGCTTTTTAGCTGATTTAGAC
TACTATAAAATACGCTATCATGCTGTTTTTTAA

Upstream 100 bases:

>100_bases
GAAGAATTGCAAGCCTTTAACACGAACAATGATAAAATGACTTTAGGGGATATTCTTAAAGAAAAACTCTAGAGACTTGA
TTTAAAAACATGGGAATGGC

Downstream 100 bases:

>100_bases
ATTCAAAGGATAAAAATGTATCAAGTAGCCATTTGCGACCCCATCCATGCCAAAGGCATTCAAATTTTAGAAGCTCAAAA
AGATATTGTTTTGCATGATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MRFKSVVAFISLAAALGVLAYLFLSVKKEIPTVSFINKNPSQTEKSHDINLEETPNNPNESANNPHNEETHNNTLSQNLD
AQDSINYPVIEHHFEVPFEEGKREYSKLIIKDLKDYQFLCLKEILKKEQIDYAYDNTNNQSNLIVYLDENKKERFLADLD
YYKIRYHAVF

Sequences:

>Translated_170_residues
MRFKSVVAFISLAAALGVLAYLFLSVKKEIPTVSFINKNPSQTEKSHDINLEETPNNPNESANNPHNEETHNNTLSQNLD
AQDSINYPVIEHHFEVPFEEGKREYSKLIIKDLKDYQFLCLKEILKKEQIDYAYDNTNNQSNLIVYLDENKKERFLADLD
YYKIRYHAVF
>Mature_170_residues
MRFKSVVAFISLAAALGVLAYLFLSVKKEIPTVSFINKNPSQTEKSHDINLEETPNNPNESANNPHNEETHNNTLSQNLD
AQDSINYPVIEHHFEVPFEEGKREYSKLIIKDLKDYQFLCLKEILKKEQIDYAYDNTNNQSNLIVYLDENKKERFLADLD
YYKIRYHAVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19861; Mature: 19861

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKSVVAFISLAAALGVLAYLFLSVKKEIPTVSFINKNPSQTEKSHDINLEETPNNPNE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
SANNPHNEETHNNTLSQNLDAQDSINYPVIEHHFEVPFEEGKREYSKLIIKDLKDYQFLC
CCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LKEILKKEQIDYAYDNTNNQSNLIVYLDENKKERFLADLDYYKIRYHAVF
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEC
>Mature Secondary Structure
MRFKSVVAFISLAAALGVLAYLFLSVKKEIPTVSFINKNPSQTEKSHDINLEETPNNPNE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
SANNPHNEETHNNTLSQNLDAQDSINYPVIEHHFEVPFEEGKREYSKLIIKDLKDYQFLC
CCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LKEILKKEQIDYAYDNTNNQSNLIVYLDENKKERFLADLDYYKIRYHAVF
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA