| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is 109947019
Identifier: 109947019
GI number: 109947019
Start: 359442
End: 360512
Strand: Direct
Name: 109947019
Synonym: Hac_0413
Alternate gene names: NA
Gene position: 359442-360512 (Clockwise)
Preceding gene: 109947018
Following gene: 109947020
Centisome position: 23.13
GC content: 35.39
Gene sequence:
>1071_bases ATGGGGTGCAATAAAAAGTGGAAAAAGATTAAAATGGTTAAACGCTACCTTTTTATGGCGGTTTCGCAAGTCTTTTTTTC TTTCTTTTTAGTACTGTTTTTTATCTCTTCTATCGTGCTATTAATTAGTATCGCAAGCGTAACACTTGTGATTAAAGTGA GCTTTTTGGATCTAGTGCAACTTTTTTTGTATTCCTTGCCTGGAACTATCTTTTTTATTTTGCCGATCACTTTTTTTGCG GCTTGTGCTTTGGGACTTTCAAGGCTTAGTTATGACCATGAACTATTAGTCTTTTTTTCTTTAGGGGTTTCGCCTAAAAA AATGACTAAAGCGTTTGTGCCATTAAGTATTTTAGTGAGTGCGATTTTATTGGTGTTTTCGCTTGTTTTAATCCCCACTT CCAAGAGCGCTTATTATGGGTTTTTGCATCAAAAAAAGGACAAGATTGACATTAATATAAGAGTGGGCGAGTTTGGGCAA AAATTAGGCGATTGGCTCGTGTATGTGGATAAGGCTGAAAACAATTCCTATGATAATTTGGTGCTTTTTTCTAATAAAAG TCTCTCTCAAGAAAGCTTTATTTTGGCTCAAAAAGGCAATATTAACAACCAAAATGGCGTGTTTGAATTGAATTTATACA AAGGGCATGCGTATTTCACTCAAGGCGATAAAATGCGTAAAATTGATTTTGAGGAATTGCATTTACGCAACAAGCTCAAG TCGTTTAACGCTAACGATGCGTCTTATTTGCAAGGCACGGATTATTTAGGTTATTGGAAAAGAGCTTTTGGTAAAAGCGC TAATAAAAGTCAAAAACGCCGTTTTTCTCAAGCGATTTTGGTTTCATTATTCCCTTTAGCGAGCGTGTTTTTAATCCCTT TATTTGGTATCGCCAACCCACGATTCAAAACGAATTGGAGTTATTTCTATGTCCTTGGGGCGGTTGGGATTTATTTTTTA ATGGTGCATGTGATTTCTACCGATTTGTTTTTGATGACCTTTATCTTCCCCTTTATTTGGGCGTTTGCCTCTTATTTGTT GTTTAGAAAATTCATTTTAAAGCGTTATTAA
Upstream 100 bases:
>100_bases CAAGAAAATAACGAGCAAGTGATCAAACGATTCGTGAAGCAAAATAACACCTTGTGCGTCCAAAAAGTGCTAGAAAAATG CTCATTTGTGCCTGTTGTAG
Downstream 100 bases:
>100_bases AATGCGTTGTTTTAAGGCTACTATCGCTTATGATGGGGCGTATTTTTTAGGCTATGCCAAACAGCCTGACAAACTTGGCG TGCAAGATAAAATTGAAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MGCNKKWKKIKMVKRYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFA ACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVSAILLVFSLVLIPTSKSAYYGFLHQKKDKIDINIRVGEFGQ KLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKIDFEELHLRNKLK SFNANDASYLQGTDYLGYWKRAFGKSANKSQKRRFSQAILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGIYFL MVHVISTDLFLMTFIFPFIWAFASYLLFRKFILKRY
Sequences:
>Translated_356_residues MGCNKKWKKIKMVKRYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFA ACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVSAILLVFSLVLIPTSKSAYYGFLHQKKDKIDINIRVGEFGQ KLGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKIDFEELHLRNKLK SFNANDASYLQGTDYLGYWKRAFGKSANKSQKRRFSQAILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGIYFL MVHVISTDLFLMTFIFPFIWAFASYLLFRKFILKRY >Mature_355_residues GCNKKWKKIKMVKRYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFAA CALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVSAILLVFSLVLIPTSKSAYYGFLHQKKDKIDINIRVGEFGQK LGDWLVYVDKAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKIDFEELHLRNKLKS FNANDASYLQGTDYLGYWKRAFGKSANKSQKRRFSQAILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGIYFLM VHVISTDLFLMTFIFPFIWAFASYLLFRKFILKRY
Specific function: Unknown
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40987; Mature: 40856
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGCNKKWKKIKMVKRYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFLYSLPGTIFFILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCHHHHHH AILLVFSLVLIPTSKSAYYGFLHQKKDKIDINIRVGEFGQKLGDWLVYVDKAENNSYDNL HHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEECHHHHHHCCCEEEEECCCCCCCCCE VLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKIDFEELHLRNKLK EEEECCCCCCCCEEEEECCCCCCCCCEEEEEEEECEEEEECCCCEECCCHHHHHHHHHHH SFNANDASYLQGTDYLGYWKRAFGKSANKSQKRRFSQAILVSLFPLASVFLIPLFGIANP CCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RFKTNWSYFYVLGAVGIYFLMVHVISTDLFLMTFIFPFIWAFASYLLFRKFILKRY CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GCNKKWKKIKMVKRYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFLYSLPGTIFFILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCHHHHHH AILLVFSLVLIPTSKSAYYGFLHQKKDKIDINIRVGEFGQKLGDWLVYVDKAENNSYDNL HHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEECHHHHHHCCCEEEEECCCCCCCCCE VLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKIDFEELHLRNKLK EEEECCCCCCCCEEEEECCCCCCCCCEEEEEEEECEEEEECCCCEECCCHHHHHHHHHHH SFNANDASYLQGTDYLGYWKRAFGKSANKSQKRRFSQAILVSLFPLASVFLIPLFGIANP CCCCCCCHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RFKTNWSYFYVLGAVGIYFLMVHVISTDLFLMTFIFPFIWAFASYLLFRKFILKRY CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA