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The map label for this gene is deoB

Identifier: 109947006

GI number: 109947006

Start: 344100

End: 345341

Strand: Direct

Name: deoB

Synonym: Hac_0399

Alternate gene names: 109947006

Gene position: 344100-345341 (Clockwise)

Preceding gene: 109947005

Following gene: 109947007

Centisome position: 22.14

GC content: 38.16

Gene sequence:

>1242_bases
ATGCAAAAAAGAGTGGTGGTTTTATTACTAGATTCTTTTGGTATAGGGGCTAGTGAAGACGCTAAAGATTTTGGCGATTT
GGGGGCGAACACTTTAGGCAATATCGCTAAGGCTTGTTTTAACAACCTAGCTGATTCTAATGATCGCAATGGGGCTTTAA
AACTGCCTAACTTAGAGAGTTTGGGTTTAGGCTTGAGCGCTTTAAAAGCCACGAATGAATTGCCTTTGGGTTTTGATTCT
CATCCCAACTTAATAGGGGCTTACGCTTACGCTCAAGAACTCTCTAGTGCTAAGGATACGATTTCTGGGCATTGGGAGAT
GATGGGTGCACCCATTCTTTTTGAATGGGGGTATTTTAAAGATAAAAACAATTCTTTCCCTAAAGAAATTTTAGATGAAA
TTATGCATAAAACCAAGATTAAGGGTTATTTAGGGAATTGCCACGCATCAGGGACTGAAATCATTAAAGATTTAGGCGAA
AAGCATTTAGAAACTTTGTACCCCATTTTTTACACTTCAGCGGATTCAGTGTTTCAAATCGCTGTGCATGAAGAAAAGTT
TGGGCTTGATAAGTTATACGCCCTTTGTGAAGAAGTGTTTGAAATTTTAGAGCCTTTAAAAATCGCCAGAGTGATCGCAA
GGTCTTTTATTGGCACAAATAAAGATAATTTCAAACGTACTTCCAACCGCAAAGACTATGCGATAAAGCCTCATAAAAAA
TTGCTTTTTGAAACATTCATTGAAGAAAAACAAGGCGAAGTCATTAGCATTGGAAAAATCGCTGACATTTACGCCCATGT
GGGGATCACTCAAAAATTCAAAGCCGGTAGTTTGATGGAGCTGTGCGATGTAACTTTAGAGCAGGTCAAAAACGCCCAAA
ACAATAGCTTGATTTTTACGAATTTTGTGCATTTTGATAGCGATTATGGGCATAGGCGTGATGTGATTGGGTATGCTAAC
GCTTTAGAATATTTTGATGCGTACTTAAAAGAGATTTTAGAAAGTTTAAGAGAAAATGACTTGCTCATTCTTTGCGCTGA
TCATGGGTGTGATCCTAGTTTTAAGGGCACAGATCACACACGAGAATATATTCCTGTTTTGATGTATCACAAAGATTTAC
AACCGACCTTTTTAGGCAGGAGCGAGACTTTTGCGGATATTGGGCAGAGTATCGCTCATTTTTTGGGATTAAGCCCCCTA
GATTATGGCAAAAATTTATTGAATTTTAAAGGACAACCATGA

Upstream 100 bases:

>100_bases
TCGCTTTAAGAGCGGTGCTTGCAGGCACTCTTTCTAATTTCATGAGCGCGACTATCGCTGGGCTATTCATAGAGCTAAAC
AGCCATTAAAAGGACAAGAC

Downstream 100 bases:

>100_bases
CCCCTCACATTAACGCCAAAATCGGCGACTTTCATCCTCAATGCATTTTATGCGGCGATCCTTTAAGGGTGAGCTATATT
GCAAAAAATTTTTTACAAGA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MQKRVVVLLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRNGALKLPNLESLGLGLSALKATNELPLGFDS
HPNLIGAYAYAQELSSAKDTISGHWEMMGAPILFEWGYFKDKNNSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGE
KHLETLYPIFYTSADSVFQIAVHEEKFGLDKLYALCEEVFEILEPLKIARVIARSFIGTNKDNFKRTSNRKDYAIKPHKK
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQVKNAQNNSLIFTNFVHFDSDYGHRRDVIGYAN
ALEYFDAYLKEILESLRENDLLILCADHGCDPSFKGTDHTREYIPVLMYHKDLQPTFLGRSETFADIGQSIAHFLGLSPL
DYGKNLLNFKGQP

Sequences:

>Translated_413_residues
MQKRVVVLLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRNGALKLPNLESLGLGLSALKATNELPLGFDS
HPNLIGAYAYAQELSSAKDTISGHWEMMGAPILFEWGYFKDKNNSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGE
KHLETLYPIFYTSADSVFQIAVHEEKFGLDKLYALCEEVFEILEPLKIARVIARSFIGTNKDNFKRTSNRKDYAIKPHKK
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQVKNAQNNSLIFTNFVHFDSDYGHRRDVIGYAN
ALEYFDAYLKEILESLRENDLLILCADHGCDPSFKGTDHTREYIPVLMYHKDLQPTFLGRSETFADIGQSIAHFLGLSPL
DYGKNLLNFKGQP
>Mature_413_residues
MQKRVVVLLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRNGALKLPNLESLGLGLSALKATNELPLGFDS
HPNLIGAYAYAQELSSAKDTISGHWEMMGAPILFEWGYFKDKNNSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGE
KHLETLYPIFYTSADSVFQIAVHEEKFGLDKLYALCEEVFEILEPLKIARVIARSFIGTNKDNFKRTSNRKDYAIKPHKK
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQVKNAQNNSLIFTNFVHFDSDYGHRRDVIGYAN
ALEYFDAYLKEILESLRENDLLILCADHGCDPSFKGTDHTREYIPVLMYHKDLQPTFLGRSETFADIGQSIAHFLGLSPL
DYGKNLLNFKGQP

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=56.5110565110565, Blast_Score=482, Evalue=1e-137,
Organism=Escherichia coli, GI1789781, Length=420, Percent_Identity=26.4285714285714, Blast_Score=114, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_HELAH (Q17YP1)

Other databases:

- EMBL:   AM260522
- RefSeq:   YP_664234.1
- ProteinModelPortal:   Q17YP1
- SMR:   Q17YP1
- STRING:   Q17YP1
- GeneID:   4177125
- GenomeReviews:   AM260522_GR
- KEGG:   hac:Hac_0399
- NMPDR:   fig|382638.8.peg.388
- eggNOG:   COG1015
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- PhylomeDB:   Q17YP1
- ProtClustDB:   PRK05362
- BioCyc:   HACI382638:HAC_0399-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 46255; Mature: 46255

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKRVVVLLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRNGALKLPNLES
CCCCEEEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHH
LGLGLSALKATNELPLGFDSHPNLIGAYAYAQELSSAKDTISGHWEMMGAPILFEWGYFK
HCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEECCCEE
DKNNSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
AVHEEKFGLDKLYALCEEVFEILEPLKIARVIARSFIGTNKDNFKRTSNRKDYAIKPHKK
EECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEECHHHH
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQVKNAQNNSLIFT
HHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
NFVHFDSDYGHRRDVIGYANALEYFDAYLKEILESLRENDLLILCADHGCDPSFKGTDHT
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCH
REYIPVLMYHKDLQPTFLGRSETFADIGQSIAHFLGLSPLDYGKNLLNFKGQP
HHHHHHHEEECCCCCHHCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCC
>Mature Secondary Structure
MQKRVVVLLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRNGALKLPNLES
CCCCEEEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHH
LGLGLSALKATNELPLGFDSHPNLIGAYAYAQELSSAKDTISGHWEMMGAPILFEWGYFK
HCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEECCCEE
DKNNSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
AVHEEKFGLDKLYALCEEVFEILEPLKIARVIARSFIGTNKDNFKRTSNRKDYAIKPHKK
EECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEECHHHH
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQVKNAQNNSLIFT
HHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
NFVHFDSDYGHRRDVIGYANALEYFDAYLKEILESLRENDLLILCADHGCDPSFKGTDHT
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCH
REYIPVLMYHKDLQPTFLGRSETFADIGQSIAHFLGLSPLDYGKNLLNFKGQP
HHHHHHHEEECCCCCHHCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA