Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 109946905

GI number: 109946905

Start: 244643

End: 245614

Strand: Direct

Name: secF [H]

Synonym: Hac_0291

Alternate gene names: 109946905

Gene position: 244643-245614 (Clockwise)

Preceding gene: 109946904

Following gene: 109946906

Centisome position: 15.74

GC content: 39.2

Gene sequence:

>972_bases
ATGGAATTATTCAAACAAACTAGAATTTTAAGCTTCATGCGTTATTCCAATTATGGGGCGATTCTTTCAGCGATTTTGGT
GCTTCTAGCGTTAGGGCTTTTGTTTTTTAAAGGGTTTTCTTTGGGGATTGATTTTGCTGGGGGGAGTTTGGTGCAGGTGC
GTTATCCACAAAACGCTCCCATTAAAGAAGTGCGCGCTCTTTTTGAAAAAGAAACCCGTTTTAAGGGTGTTCAGGTGAGT
GAGTTTGGCTCTAAAGAAGAGATTTTAATCAAATTCCCTTTTGTAGAAACAGCCCAAAACGAAGATTTGAACGCTATCGT
CGCCAACATTCTAAAGCCCAGTGGCGATTTTGAAATCCGTAAATTTGACACCGTGGGTCCTAGAGTGGGGAGCGAGTTGA
AAGAAAAGGGCATTTTATCGCTGATTTTAGCCTTAATAGCGATCATGGTTTATGTGAGTTTCCGCTATGAATGGCGTTTC
GCTTTAGCGAGCGTTGTTGCACTTGTGCATGATGTGATTTTAGTGGCAAGCTCAGTAATCCTTTTTAAAATTGATATGAA
TTTAGAAGTGATTGCGGCTTTGCTCACTTTGATTGGGTATTCTATTAACGATACGATCATAATCTTTGACAGGATTAGAG
AAGAGATGTTGTCTCAAAAATCTAAAAACGCCGCTCAAGCCATTGATGAAGCCATTTCTAGCACGCTCACGCGCACGCTT
TTAACTTCTTTAACCGTGTTTTTTGTGGTGTTGATTTTATGTGTGTTTGGGAGTAAGATCATCATTGGTTTTTCATTGCC
CATGTTAATAGGCACGATTGTAGGGACTTATAGCTCTATTTTCATTGCCCCTAAAGTGGCGTTGTTGTTAGGTTTTGATA
TGTATAAATATTATGAGAATGAGGCTAGAAAAGTCAAAAAAGCTCAAGAAAAAGAAAAAATGCGCCGTTTGTATGAAAGC
GGTCTAGTTTAA

Upstream 100 bases:

>100_bases
GCACGCAAGGGATTTATCAAGCCCTTTTGCCTAAATTGACCCAAACCAAGAGCCTTTACTTTTGGTTTGGCGTGAAAAAT
AAAAGAGCTTAGGAGTTTTT

Downstream 100 bases:

>100_bases
GGAGTTTCTATGGATTGGGGTCGAGTCGTTCATGTGTTGTTCAGTCTTATTTCTTTAACGACCATTGCAGGGTTTTTGTA
TGAACCTAATATTGCGGTGC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MELFKQTRILSFMRYSNYGAILSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYPQNAPIKEVRALFEKETRFKGVQVS
EFGSKEEILIKFPFVETAQNEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVVALVHDVILVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKSKNAAQAIDEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMYKYYENEARKVKKAQEKEKMRRLYES
GLV

Sequences:

>Translated_323_residues
MELFKQTRILSFMRYSNYGAILSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYPQNAPIKEVRALFEKETRFKGVQVS
EFGSKEEILIKFPFVETAQNEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVVALVHDVILVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKSKNAAQAIDEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMYKYYENEARKVKKAQEKEKMRRLYES
GLV
>Mature_323_residues
MELFKQTRILSFMRYSNYGAILSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYPQNAPIKEVRALFEKETRFKGVQVS
EFGSKEEILIKFPFVETAQNEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVVALVHDVILVASSVILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKSKNAAQAIDEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMYKYYENEARKVKKAQEKEKMRRLYES
GLV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=311, Percent_Identity=34.0836012861736, Blast_Score=201, Evalue=6e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 36189; Mature: 36189

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFKQTRILSFMRYSNYGAILSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYPQNAP
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHCEEEECCCCEEEEECCCCCC
IKEVRALFEKETRFKGVQVSEFGSKEEILIKFPFVETAQNEDLNAIVANILKPSGDFEIR
HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCHHCCCCCCHHHHHHHHHCCCCCCEEE
KFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASSVI
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKSKNAAQAIDEAISSTLTRTL
EEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMYKYYEN
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EARKVKKAQEKEKMRRLYESGLV
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELFKQTRILSFMRYSNYGAILSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYPQNAP
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHCEEEECCCCEEEEECCCCCC
IKEVRALFEKETRFKGVQVSEFGSKEEILIKFPFVETAQNEDLNAIVANILKPSGDFEIR
HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCHHCCCCCCHHHHHHHHHCCCCCCEEE
KFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASSVI
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKSKNAAQAIDEAISSTLTRTL
EEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMYKYYEN
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EARKVKKAQEKEKMRRLYESGLV
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]