Definition Helicobacter acinonychis str. Sheeba chromosome, complete genome.
Accession NC_008229
Length 1,553,927

Click here to switch to the map view.

The map label for this gene is fragment 1

Identifier: 109946823

GI number: 109946823

Start: 169378

End: 171972

Strand: Direct

Name: fragment 1

Synonym: Hac_0201

Alternate gene names: NA

Gene position: 169378-171972 (Clockwise)

Preceding gene: 109946822

Following gene: 109946824

Centisome position: 10.9

GC content: 37.57

Gene sequence:

>2595_bases
ATGCTAAAAGAGTATTTAGAAAGCATTAAAGACATCACGCCCGAAAAGAATGAACACACGCACCGCCTTTTTTTATACAA
CTTGCTTGAGGGCTTAAAAGACAATTTCAATAAAGAATTTAAGATTGAGCATGAGCCTAAAAGAGACAAACAAGGGGGTC
AGCCTGATTTTCGCATTTCTTTTCAAGGGCTTAACATTGGCTATGTAGAAAACAAAAGAGCAGGGACCAAACTTAACGAA
CTCTTAAAAAGCGATCAGGTCCTCAAATACTTAGAGCTAAACCAAAATCTCATGCTCACGGATTACCTTAATTTCATGTG
GGTGGGAAAAGATGAAAATAACAAGCCTTGGATTAAAAAAGAAATCTCTATCGCCAGCCTTGATGAACTCTCTAAACCCC
TAAAAACTGAACGCGATCTCATTGAATTTTTTAGAGGCTTTTTCAACTACGAACCAGTGCCTATCGCTAACGCCAAAGAT
TTTGCAACGCATTTAAGCACACCCACCAAGTATTTAAAAGACGCTTTAATCGCATACCAAGAAGACGCACAAGTTTCTAG
CATTTTTAACAATTTTAAAGAATATCTTTATGAAGAATTGAGTTTTGAAGACTTTAGCGATGCGTTCGCTCAAACGCTCA
CCTACAGCCTTTTTCTAGCCAAACTCAACCACCCTTTTGAAAAAATAAATTTGGATAATGTGAGAAGCTCCATTCCTAAA
AATTTCGCTGTGATCAGAGAAATGGCGGATTTTTTAAAGAAACTTGATGGAATCAAAGAAATCCAATGGCTTTTAGATGA
AATTTTAATCTTGATCAACCATGTTGATATGGACTCTATCGTTAAAGATTTGAGTGAGGATAAAGACCCTTATTTGCACT
TTTATGAAACCTTTTTAAGCGCTTATGACCCTGAATTGCGAGAGAAAAAGGGCGTGTATTACACTCCGGATTCTGTGGTG
AAATTCATCATTAACGCTTTAGATAGTTTGCTTAAAACGCATTTTAAAGACGCTCCCTTAGGCTTAAAAAGCGCTTTAGA
TAACGAAAATATCAAGCTCTTAGATTTTGCTACCGGCACCGGCACTTTTTTATTGGAAGCGTTCAGGAAAGCACTAGAAA
TGAGAAAAACAAGCGATGGAGGCATCTCCACTAAAGAGGACAAATACCAAAACCTCTTGAAGCAATTTTATGGGTTTGAA
TACTTGATCGCTCCTTATGCGATCGCTCATTTGAATCTCTATCAAGCCTTTAAGGAGGAATTTAAAAAGCCTCTCAAAGA
AAACGATGCACTCAAAATCGTTTTAACTAACACTCTCATACAGCCTAGTGAGATCGCCGCTTATCGTGGGCTAAACCCAA
TTTTTGAAGAAGAGCTTTTAAACGCTCAAGAGATTAAGAAAGATGAAAAGATCCTTATCATCACCGGCAATCCCCCTTAT
AGCGGAGCGAGCAGCAATAAGGGCTTGTTTGAATGGGAAGTGAAAGCCACTTACGGCATAGAGCCTGAATTTCAAACCAT
AGAAATTGAAAAAAATGTTAAACTCACCGACAAAATCCAAACGCTTTTAAACAGCATTCAAACCCAAAAACAAAGCGGCA
GCAAAAACGCTCTCAAAACCCTTAAAAAATTTCATTCCAAATACAAACTAAAAAATGAGAAAAACCCTAAAGGGCTTTTA
GATGATTATGTGAAATTCATGCGTTTCGCCCAAAACAAGATCGAATCATTGGGGTATGGTCTCTTTGGCTTTATCTCTAA
CAACAGCTTTTTAAATAACCCTACTTTTAGGGGGTTAAGGCGCTCTCTTTTAGAATGTTATGATGAGCTTTATATTCTCA
ATTTGCATGGAGATGCGAGGAAAAAGGAGCTAACCCCACAAGGCGCAAAAGATGAAAATGTTTTCAATATCATGCAAGGG
GTGTCCATTAACCTTTTTGTCAAAAACCCACAAGCCACCAAGCAAAAAATCTATTATTATGATGTGTATGGCGAAAGGGC
TGAAAAATACGCCTTTTTAGCCCAACATGATTTGGATAGTATTAATTGGCTTGAGCTTACCCCAAGAGAGCCTTTTTGCT
TACTCATACCCCAAAAAATGCACTTTTTAGATGAGTATGAACAAGGGTTTAGTGTTCAGGAGATGTTTCAAATCTCAAGT
GTGGGGATTGTTACAGGAAAAGATAAAATTTTTATTGCCAACAGCACCAAAAGTTTAAAAGAGCAAGTCTTAAAATATTG
TAACGAGTTTAACGAACAATGCGTTAAGGACATTCACTATCGTCCTTTTGATATTCGTAAAGTTTATTACGACACCAAAA
AATTAGGAAGAGCGAGGGAAAATACATTTAAACACATGTTACCCCCCCCAACAGATCCTAAAACACCCAATCAAACACGC
AAAAATATCGCGCTAAACACCCCACGACAACTAAAAAACAACGATAAAAATTGGACGCAATGTTTGATAAGCTCTCACAT
TAACGATCAAGGTTTAAGCTCTGGGGCAATGGAAGTGGGGTTAATTACCCCCTTTATCAATTCCAAGACCCCAACTACAC
CGAAAATTTTACGCCAGAGTTTAGAAACTTTATAG

Upstream 100 bases:

>100_bases
GGCGTAGATGCCATTAGCGTAGGGGCTTTAATCCATCAAGCCACTTTTATTGACATGCACATGAAAATGGCTTGAAAACT
TTGAAAAAGGGGTTATTAGT

Downstream 100 bases:

>100_bases
ACAAGCGCTATAACCATTATTTTGAGCCACTAGAGATTTTAGGCTATATTTATGCGTTATTGTATTCCCCAAACTACCGC
AAGCGTTATGAAGATTTTCT

Product: adenine specific DNA methyltransferase fragment 1

Products: NA

Alternate protein names: Helicase/Methyltransferase; Superfamily II DNA/RNA Helicase; DNA Methyltransferase; N-6 DNA Methylase; Helicase; D12 Class N6 Adenine-Specific DNA Methyltransferase; Type III Restriction Protein Res Subunit; N-6 DNA Methylase Family; II DNA/RNA Helicase; Helicase-Like Protein; Site-Specific DNA-Methyltransferase; Endonuclease And Methylase LlaGI; Restriction- System LlaBIII; Helicase Domain-Containing Protein

Number of amino acids: Translated: 864; Mature: 864

Protein sequence:

>864_residues
MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRISFQGLNIGYVENKRAGTKLNE
LLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKKEISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKD
FATHLSTPTKYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK
NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLSAYDPELREKKGVYYTPDSVV
KFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFE
YLIAPYAIAHLNLYQAFKEEFKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY
SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKTLKKFHSKYKLKNEKNPKGLL
DDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLRRSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQG
VSINLFVKNPQATKQKIYYYDVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS
VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARENTFKHMLPPPTDPKTPNQTR
KNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVGLITPFINSKTPTTPKILRQSLETL

Sequences:

>Translated_864_residues
MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRISFQGLNIGYVENKRAGTKLNE
LLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKKEISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKD
FATHLSTPTKYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK
NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLSAYDPELREKKGVYYTPDSVV
KFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFE
YLIAPYAIAHLNLYQAFKEEFKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY
SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKTLKKFHSKYKLKNEKNPKGLL
DDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLRRSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQG
VSINLFVKNPQATKQKIYYYDVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS
VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARENTFKHMLPPPTDPKTPNQTR
KNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVGLITPFINSKTPTTPKILRQSLETL
>Mature_864_residues
MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRISFQGLNIGYVENKRAGTKLNE
LLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKKEISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKD
FATHLSTPTKYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK
NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLSAYDPELREKKGVYYTPDSVV
KFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFE
YLIAPYAIAHLNLYQAFKEEFKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY
SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKTLKKFHSKYKLKNEKNPKGLL
DDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLRRSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQG
VSINLFVKNPQATKQKIYYYDVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS
VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARENTFKHMLPPPTDPKTPNQTR
KNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVGLITPFINSKTPTTPKILRQSLETL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 100153; Mature: 100153

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRIS
CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEE
FQGLNIGYVENKRAGTKLNELLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKK
EECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCHHH
EISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKDFATHLSTPTKYLKDALIAYQ
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHH
EDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCH
NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHH
AYDPELREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGT
HCCCHHHHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCC
GTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLYQAFKEE
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY
HHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCHHHCCCCCEEEEEECCCCC
SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKT
CCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
LKKFHSKYKLKNEKNPKGLLDDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLR
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
RSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQGVSINLFVKNPQATKQKIYYY
HHHHHHHHHEEEEEECCCCHHHCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCEEEEE
DVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS
EECCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHH
VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARE
CEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
NTFKHMLPPPTDPKTPNQTRKNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVG
HHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEE
LITPFINSKTPTTPKILRQSLETL
EEECCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRIS
CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEE
FQGLNIGYVENKRAGTKLNELLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKK
EECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCHHH
EISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKDFATHLSTPTKYLKDALIAYQ
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHH
EDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCH
NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHH
AYDPELREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGT
HCCCHHHHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCC
GTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLYQAFKEE
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY
HHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCHHHCCCCCEEEEEECCCCC
SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKT
CCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
LKKFHSKYKLKNEKNPKGLLDDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLR
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
RSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQGVSINLFVKNPQATKQKIYYY
HHHHHHHHHEEEEEECCCCHHHCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCEEEEE
DVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS
EECCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHH
VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARE
CEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
NTFKHMLPPPTDPKTPNQTRKNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVG
HHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEE
LITPFINSKTPTTPKILRQSLETL
EEECCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA