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The map label for this gene is psd [H]

Identifier: 109946820

GI number: 109946820

Start: 166728

End: 167531

Strand: Direct

Name: psd [H]

Synonym: Hac_0198

Alternate gene names: 109946820

Gene position: 166728-167531 (Clockwise)

Preceding gene: 109946819

Following gene: 109946821

Centisome position: 10.73

GC content: 37.56

Gene sequence:

>804_bases
ATGGTAGCTTTAAGTAACGCTCTTTCAAGGGCTTTTGGCTCTTTGGCTGGTTATGAATTCCCTTTTTTTATCCAAAAATG
CATCAACGCCCTTTATGTTAAAATCTTCAAAATTGATTTGAGCGAGTTTGAGCCTTTGGAAAATTATAAAAGTTTGAATG
CCCTTTTCACGCGCTCTTTAAAAAAAGAACGGCCCTTTGACAAAGCCCTTAAGACATGCATTGCACCATGCGATTCTTTG
GTAACTGAATGCGCTTTTTTAGACAATGATACCGCCTTACAAATTAAAGGCATGCCCTATAAAGCGCATGAATTAGTGGG
CGAAATTAACCCCCTAGACCCTTCTTTTTTTTATGTGAATTTCTACCTTTCGCCCAAAGATTACCACCACTACCACGCTC
CTTGCGATTTAGAAATTTTAGAGGCTCGTTGTTTTGCGGGGAAATTATTACCGGTGAATAAGCCATCATTAAATAAAAAC
AAAAATTTGTTTGTGGGCAATGAAAGGGTGGCGCTTGTTACAAGAGATATTCAAGGCAATCAATTGTATTTTGTAGCGGT
GGGAGCGTTGAATGTGGGTAAAATGCGTTTTAATTTTGATCAAAATATCCAAACTAACGCTAAATCCCATTTTACGCAAA
CCTATTCTTACAACCCCCCTATTAAGGTGAAAAAGGGGGATAATTTAGGGAATTTTGAAATGGGATCTACTGTTGTTTTA
TTCACTCAAAATATCGCTTTTAAAGAATTAAGGGAAAAAAGCGTGAAGTTTGGGGAAAGTATAGGGGAATTTCATGCCAA
CTGA

Upstream 100 bases:

>100_bases
TGAAAATGTATCAAGAAGGTTATAGCGTGGATTCTATTTCTAAAGAATTTAAAGTGAGTAAGGGCGAAGTGGAATTTATA
TTGAACATGGCAGGGTTAAA

Downstream 100 bases:

>100_bases
CAGCGATTTAAAAGCCTCTATTGTAGAATTATTAAACGATTTAGACGTGCTTTTAGTGGCTCATTTTTATCAAAAAGATG
AGATTGTGGAATTGGCTCAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MVALSNALSRAFGSLAGYEFPFFIQKCINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKALKTCIAPCDSL
VTECAFLDNDTALQIKGMPYKAHELVGEINPLDPSFFYVNFYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLNKN
KNLFVGNERVALVTRDIQGNQLYFVAVGALNVGKMRFNFDQNIQTNAKSHFTQTYSYNPPIKVKKGDNLGNFEMGSTVVL
FTQNIAFKELREKSVKFGESIGEFHAN

Sequences:

>Translated_267_residues
MVALSNALSRAFGSLAGYEFPFFIQKCINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKALKTCIAPCDSL
VTECAFLDNDTALQIKGMPYKAHELVGEINPLDPSFFYVNFYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLNKN
KNLFVGNERVALVTRDIQGNQLYFVAVGALNVGKMRFNFDQNIQTNAKSHFTQTYSYNPPIKVKKGDNLGNFEMGSTVVL
FTQNIAFKELREKSVKFGESIGEFHAN
>Mature_267_residues
MVALSNALSRAFGSLAGYEFPFFIQKCINALYVKIFKIDLSEFEPLENYKSLNALFTRSLKKERPFDKALKTCIAPCDSL
VTECAFLDNDTALQIKGMPYKAHELVGEINPLDPSFFYVNFYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLNKN
KNLFVGNERVALVTRDIQGNQLYFVAVGALNVGKMRFNFDQNIQTNAKSHFTQTYSYNPPIKVKKGDNLGNFEMGSTVVL
FTQNIAFKELREKSVKFGESIGEFHAN

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=295, Percent_Identity=29.4915254237288, Blast_Score=136, Evalue=2e-32,
Organism=Escherichia coli, GI1790604, Length=229, Percent_Identity=29.2576419213974, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71980843, Length=273, Percent_Identity=27.8388278388278, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71980840, Length=273, Percent_Identity=27.4725274725275, Blast_Score=92, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6324160, Length=172, Percent_Identity=39.5348837209302, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6321609, Length=247, Percent_Identity=25.1012145748988, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649526, Length=295, Percent_Identity=27.4576271186441, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24649528, Length=295, Percent_Identity=27.4576271186441, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24649524, Length=295, Percent_Identity=27.4576271186441, Blast_Score=107, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 30255; Mature: 30255

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALSNALSRAFGSLAGYEFPFFIQKCINALYVKIFKIDLSEFEPLENYKSLNALFTRSL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEHHHCCCHHHHHHHHHHHHHHH
KKERPFDKALKTCIAPCDSLVTECAFLDNDTALQIKGMPYKAHELVGEINPLDPSFFYVN
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
FYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLNKNKNLFVGNERVALVTRDIQGN
EEECCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEECCCEEEEEEEECCCC
QLYFVAVGALNVGKMRFNFDQNIQTNAKSHFTQTYSYNPPIKVKKGDNLGNFEMGSTVVL
EEEEEEEECEEECEEEECCCCCCCCCCHHHEEEEECCCCCEEEECCCCCCCCCCCCEEEE
FTQNIAFKELREKSVKFGESIGEFHAN
EECCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVALSNALSRAFGSLAGYEFPFFIQKCINALYVKIFKIDLSEFEPLENYKSLNALFTRSL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEHHHCCCHHHHHHHHHHHHHHH
KKERPFDKALKTCIAPCDSLVTECAFLDNDTALQIKGMPYKAHELVGEINPLDPSFFYVN
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
FYLSPKDYHHYHAPCDLEILEARCFAGKLLPVNKPSLNKNKNLFVGNERVALVTRDIQGN
EEECCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEECCCEEEEEEEECCCC
QLYFVAVGALNVGKMRFNFDQNIQTNAKSHFTQTYSYNPPIKVKKGDNLGNFEMGSTVVL
EEEEEEEECEEECEEEECCCCCCCCCCHHHEEEEECCCCCEEEECCCCCCCCCCCCEEEE
FTQNIAFKELREKSVKFGESIGEFHAN
EECCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA