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The map label for this gene is comB1

Identifier: 109946685

GI number: 109946685

Start: 49172

End: 49915

Strand: Direct

Name: comB1

Synonym: Hac_0052

Alternate gene names: NA

Gene position: 49172-49915 (Clockwise)

Preceding gene: 109946684

Following gene: 109946686

Centisome position: 3.16

GC content: 39.52

Gene sequence:

>744_bases
ATGAAAGAAAAGCCTTTCAACAGCGAGCAATTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTCTCTAGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGGTTGGAGAGAAACCGCTTGAAAATCGCTT
ACAAACTTTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTTTTAATCAGCCTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAATCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGCAA
TGAAGCCTTGGCTCGCTCACTGATTGGGGCGTATGTGTTAAACAGAGAGAGCATTAATCGCATTGACGATAAGTCGCGCT
ATGAATTGGTGCGTTTACAAAGCAACGCTAAAGTGTGGCAGCGCTTTGAAGATTTGATTAAAACCAACAACAGCATTTAT
GCACAAAGCCACTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATTTATCAGCAAGACAATAACCCCATTGCAAGCGT
GTCCATTGCCGCCAAACTCTTGAATGAAAACAAATTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATCTTTTTG
ACACTCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTATAGCATCACCGAAATT
GCACCTAGAAATAAGAGCGATTGA

Upstream 100 bases:

>100_bases
TTATTGGTTGCACAAGCAAGGTGCATGAGATGAAAAAAAGCCCTTGTGCATTGCATGAAAAGATGCATGAAAAACTATAT
GAAAACGGATTAAACCTTGC

Downstream 100 bases:

>100_bases
TGCAAAGATTTTTATTTATTCTTGCGTTTGTTTTTAGCGCTTTAAGGGCCGATGATTTTTTAGAAGAAACTAACGAAAAA
GCCCTCACGAATTTAAACCA

Product: ComB1 protein

Products: NA

Alternate protein names: ComB1 Protein; ComB8 Competence Protein

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKEKPFNSEQLAFLEELLSHQEKHLENKLSSFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSNAKVWQRFEDLIKTNNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APRNKSD

Sequences:

>Translated_247_residues
MKEKPFNSEQLAFLEELLSHQEKHLENKLSSFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSNAKVWQRFEDLIKTNNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APRNKSD
>Mature_247_residues
MKEKPFNSEQLAFLEELLSHQEKHLENKLSSFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSNAKVWQRFEDLIKTNNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APRNKSD

Specific function: Unknown

COG id: COG3736

COG function: function code U; Type IV secretory pathway, component VirB8

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28707; Mature: 28707

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKPFNSEQLAFLEELLSHQEKHLENKLSSFSVNDLDMQSVFRLERNRLKIAYKLLGLM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SFIALVLAIVLISLLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
NRESINRIDDKSRYELVRLQSNAKVWQRFEDLIKTNNSIYAQSHLEREVHIVNIAIYQQD
CHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEHHHCCCEEEEEEEEEEECC
NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHC
APRNKSD
CCCCCCC
>Mature Secondary Structure
MKEKPFNSEQLAFLEELLSHQEKHLENKLSSFSVNDLDMQSVFRLERNRLKIAYKLLGLM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SFIALVLAIVLISLLPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
NRESINRIDDKSRYELVRLQSNAKVWQRFEDLIKTNNSIYAQSHLEREVHIVNIAIYQQD
CHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEHHHCCCEEEEEEEEEEECC
NNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHC
APRNKSD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA