Click here to switch to the map view.

The map label for this gene is omp1 fragment 1

Identifier: 109946673

GI number: 109946673

Start: 38662

End: 39033

Strand: Reverse

Name: omp1 fragment 1

Synonym: Hac_0038

Alternate gene names: NA

Gene position: 39033-38662 (Counterclockwise)

Preceding gene: 109946674

Following gene: 109946672

Centisome position: 2.51

GC content: 43.01

Gene sequence:

>372_bases
TTGCTCTTAAACGCTGAATGCAACGATTATTTTGTAAGCATTGGCTATCAAATCGGTCAAGCCACGCAGATGGTTAAAAA
CACCGGCACGATCAAAAGGCTTTCAGACACTTATGAAAATTTAAACAACCTTTTAGATCGTTTCAACAAATTGAATTGGG
CAGTCACTAACGCTAGCAGTACCACTAGTATCAATGGCGCGATCAACAATCTCAATGAAGGCGTTAAAAATCTAACCCAA
AACACCACCTCTTCGCCCGCGTATCAGACGGTGCTTTTAGCTCTCAATTCTGCAGTGGCGATGCGGCAATTCGTCGCTCC
CAATATTTGGCTACGGAAACAATGGAAACACTTTTCAAAACACCTCCGCTAG

Upstream 100 bases:

>100_bases
CTTGTGATATGGCTTTACTTAAATTCTTGCAAGACTTCTTCACAAAACAATTTTATTCCAAAAAGAATATTTATGAAAAA
ACCCTATTACTCTCTATTCA

Downstream 100 bases:

>100_bases
GACGACTAACTGCAACCGCACTCAACATGTAGGGGTTCAAGGTACTCTCAAAACCGATGAATCCAAAAAGATCAATGAAG
CCTACCAAAAGATCTAGGCG

Product: outer membrane protein 1 fragment 1

Products: NA

Alternate protein names: Outer Membrane Protein HopQ; Outer Membrane Protein HopZ; Outer Membrane Protein/Porin; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Function; Adhesin

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MLLNAECNDYFVSIGYQIGQATQMVKNTGTIKRLSDTYENLNNLLDRFNKLNWAVTNASSTTSINGAINNLNEGVKNLTQ
NTTSSPAYQTVLLALNSAVAMRQFVAPNIWLRKQWKHFSKHLR

Sequences:

>Translated_123_residues
MLLNAECNDYFVSIGYQIGQATQMVKNTGTIKRLSDTYENLNNLLDRFNKLNWAVTNASSTTSINGAINNLNEGVKNLTQ
NTTSSPAYQTVLLALNSAVAMRQFVAPNIWLRKQWKHFSKHLR
>Mature_123_residues
MLLNAECNDYFVSIGYQIGQATQMVKNTGTIKRLSDTYENLNNLLDRFNKLNWAVTNASSTTSINGAINNLNEGVKNLTQ
NTTSSPAYQTVLLALNSAVAMRQFVAPNIWLRKQWKHFSKHLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13880; Mature: 13880

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNAECNDYFVSIGYQIGQATQMVKNTGTIKRLSDTYENLNNLLDRFNKLNWAVTNASS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCC
TTSINGAINNLNEGVKNLTQNTTSSPAYQTVLLALNSAVAMRQFVAPNIWLRKQWKHFSK
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
HLR
HCC
>Mature Secondary Structure
MLLNAECNDYFVSIGYQIGQATQMVKNTGTIKRLSDTYENLNNLLDRFNKLNWAVTNASS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCC
TTSINGAINNLNEGVKNLTQNTTSSPAYQTVLLALNSAVAMRQFVAPNIWLRKQWKHFSK
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
HLR
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA