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The map label for this gene is rfaJ

Identifier: 109946660

GI number: 109946660

Start: 24784

End: 25887

Strand: Reverse

Name: rfaJ

Synonym: Hac_0021

Alternate gene names: NA

Gene position: 25887-24784 (Counterclockwise)

Preceding gene: 109946661

Following gene: 109946659

Centisome position: 1.67

GC content: 35.33

Gene sequence:

>1104_bases
ATGAACACGCAAATCTCACCCAATCAAGTTATCCCTATTTTTATGAGTTTTGATAAAAATTACGTGCTAGGGGCAGGTGT
GAGCCTTTATTCTTTACTCGCTCATGCGAGCAAGCACACAAGCGCTATAGATTTTAGCCCTCTCAATCAAAGCAACAAAC
TTTTACCCGCTAACATCGTATACAAAATCCATTGTTTGATTAAAGGGGTAACTTTAGAGCAACAAAACAAGCTTTTAAAA
ACCATTGAGCCTTTTAAAGAATTCGCTTCATTAGAGTTTATAGATAGTGATTTGTTAGACAATTCCATAGAAAGCTATCT
TAATGAGTCTTGCTCCAAGCGTTATGGTGGGCTTCTCATTTTATGCCGGCTTTTGCTCGCTTCGCTATTTTCTAATTATT
CTAAAATCATTTCCATAGATGTGGATACGGTGTTTTTAGGCGATATTGCAAGCGCTTATTTTGCACTGGATAATGAGCCC
ACTAAACTACTTGGCATGGTTAGAGACACTTTTTCTCATCTTTCTTTTGAAACCTTTTGCAATTTTATCAAACGCACTTG
TAAGAATTTTAAAATTGATTTTTCGCATTTTAGTTCCAACGAATTGAAACGCATCCACCAAGGCTTTAACATGGGCTTTT
TGGTGGCGAATTTAGATTTATGGCGCCAAGAGGGGTTTGAAAAAATCGCTTTAGAGTTTTTAAAAAATAGAGGAAAAGAT
CTTTTCTACTCTGAACAATGCTTAGTGAATATGGTGTTTTTGGAGCGCATTTTAGAATTGCCCATCCATTATAATTGCTA
TTCTGACCTTTTCAATCAACACTACCATAAAAATATCGTCATGCTCCATTTCATCAAATACAAGCCTTGGCATTCTATCA
GTTCTTTAAACGGGCGTTTGATCTGCTATGAAACTGCAGCGAGTTTTTGGCTCGCAAACCTTTTTTGCACCCCTTTTAAA
AACGATTTCCTAAAAGAACGCCTTGAAATGACTAAAGACAAACAAATGCAATCTTTTAAAACCCACATAAGATCGCGGAC
GGTTAGAGATTATTTTTATTATAGAATAAAAAATATTTTGAAAAAAGTTTTCAAATTCTCTTAA

Upstream 100 bases:

>100_bases
TTTCAATAAAACCCAATTCAACAACCTTTATGTGGGGAGCGTTGAAGAAGTTAGGCATGCGATTTTAAAGCGCTCAAAAA
GCGGTATTAAAGAATAGCCC

Downstream 100 bases:

>100_bases
AGGACATTTTCATGGAAAAACCATTGAAGTTTTTAAAATTCTTTGCAAAGAGCGTGGCGTTAGATGAAAAATTTTTAATG
TTTCTTGTATGCAGTGCTCT

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: Lipopolysaccharide 1 2-Glucosyltransferase; Lipopolysaccharide 1 2-Glycosyltransferase; LPS 1 2-Glycosyltransferase; Lps Biosynthesis Protein

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MNTQISPNQVIPIFMSFDKNYVLGAGVSLYSLLAHASKHTSAIDFSPLNQSNKLLPANIVYKIHCLIKGVTLEQQNKLLK
TIEPFKEFASLEFIDSDLLDNSIESYLNESCSKRYGGLLILCRLLLASLFSNYSKIISIDVDTVFLGDIASAYFALDNEP
TKLLGMVRDTFSHLSFETFCNFIKRTCKNFKIDFSHFSSNELKRIHQGFNMGFLVANLDLWRQEGFEKIALEFLKNRGKD
LFYSEQCLVNMVFLERILELPIHYNCYSDLFNQHYHKNIVMLHFIKYKPWHSISSLNGRLICYETAASFWLANLFCTPFK
NDFLKERLEMTKDKQMQSFKTHIRSRTVRDYFYYRIKNILKKVFKFS

Sequences:

>Translated_367_residues
MNTQISPNQVIPIFMSFDKNYVLGAGVSLYSLLAHASKHTSAIDFSPLNQSNKLLPANIVYKIHCLIKGVTLEQQNKLLK
TIEPFKEFASLEFIDSDLLDNSIESYLNESCSKRYGGLLILCRLLLASLFSNYSKIISIDVDTVFLGDIASAYFALDNEP
TKLLGMVRDTFSHLSFETFCNFIKRTCKNFKIDFSHFSSNELKRIHQGFNMGFLVANLDLWRQEGFEKIALEFLKNRGKD
LFYSEQCLVNMVFLERILELPIHYNCYSDLFNQHYHKNIVMLHFIKYKPWHSISSLNGRLICYETAASFWLANLFCTPFK
NDFLKERLEMTKDKQMQSFKTHIRSRTVRDYFYYRIKNILKKVFKFS
>Mature_367_residues
MNTQISPNQVIPIFMSFDKNYVLGAGVSLYSLLAHASKHTSAIDFSPLNQSNKLLPANIVYKIHCLIKGVTLEQQNKLLK
TIEPFKEFASLEFIDSDLLDNSIESYLNESCSKRYGGLLILCRLLLASLFSNYSKIISIDVDTVFLGDIASAYFALDNEP
TKLLGMVRDTFSHLSFETFCNFIKRTCKNFKIDFSHFSSNELKRIHQGFNMGFLVANLDLWRQEGFEKIALEFLKNRGKD
LFYSEQCLVNMVFLERILELPIHYNCYSDLFNQHYHKNIVMLHFIKYKPWHSISSLNGRLICYETAASFWLANLFCTPFK
NDFLKERLEMTKDKQMQSFKTHIRSRTVRDYFYYRIKNILKKVFKFS

Specific function: Unknown

COG id: COG1442

COG function: function code M; Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42884; Mature: 42884

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQISPNQVIPIFMSFDKNYVLGAGVSLYSLLAHASKHTSAIDFSPLNQSNKLLPANIV
CCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
YKIHCLIKGVTLEQQNKLLKTIEPFKEFASLEFIDSDLLDNSIESYLNESCSKRYGGLLI
HEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LCRLLLASLFSNYSKIISIDVDTVFLGDIASAYFALDNEPTKLLGMVRDTFSHLSFETFC
HHHHHHHHHHCCCHHEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
NFIKRTCKNFKIDFSHFSSNELKRIHQGFNMGFLVANLDLWRQEGFEKIALEFLKNRGKD
HHHHHHHHCCEEEHHHCCHHHHHHHHCCCCCEEEEEHHHHHHHCCHHHHHHHHHHCCCCC
LFYSEQCLVNMVFLERILELPIHYNCYSDLFNQHYHKNIVMLHFIKYKPWHSISSLNGRL
CEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCHHCCCCCE
ICYETAASFWLANLFCTPFKNDFLKERLEMTKDKQMQSFKTHIRSRTVRDYFYYRIKNIL
EEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKVFKFS
HHHHCCC
>Mature Secondary Structure
MNTQISPNQVIPIFMSFDKNYVLGAGVSLYSLLAHASKHTSAIDFSPLNQSNKLLPANIV
CCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
YKIHCLIKGVTLEQQNKLLKTIEPFKEFASLEFIDSDLLDNSIESYLNESCSKRYGGLLI
HEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LCRLLLASLFSNYSKIISIDVDTVFLGDIASAYFALDNEPTKLLGMVRDTFSHLSFETFC
HHHHHHHHHHCCCHHEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
NFIKRTCKNFKIDFSHFSSNELKRIHQGFNMGFLVANLDLWRQEGFEKIALEFLKNRGKD
HHHHHHHHCCEEEHHHCCHHHHHHHHCCCCCEEEEEHHHHHHHCCHHHHHHHHHHCCCCC
LFYSEQCLVNMVFLERILELPIHYNCYSDLFNQHYHKNIVMLHFIKYKPWHSISSLNGRL
CEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCHHCCCCCE
ICYETAASFWLANLFCTPFKNDFLKERLEMTKDKQMQSFKTHIRSRTVRDYFYYRIKNIL
EEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKVFKFS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA