| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812964
Identifier: 108812964
GI number: 108812964
Start: 3160700
End: 3161629
Strand: Reverse
Name: 108812964
Synonym: YPN_2804
Alternate gene names: NA
Gene position: 3161629-3160700 (Counterclockwise)
Preceding gene: 108812965
Following gene: 108812963
Centisome position: 69.72
GC content: 34.3
Gene sequence:
>930_bases ATGCCACAAGTTAATAACATATCGACAAACAATATACACTCAGCCGGCTTTAACAACTCAAATTCAATTCAAAAATATAC TGGAGCAGTCTCATCTATAAGTGATGATTTACGTATTAATAATGAAAAGTGCAAGAGTGACATAGGAACTATAAGTGGTG ATATAAAAATTAATCGCCATTCTGCAGTCTACGGTAATGTGAATTCAGTCAGTGGCGATATTACTGTAAAAAATTCTATA GTAGATAAAGACATCACCACAGTAAGTGGTGATGTTAACGCGGTGAATTCGACTATAGGAAAAAATATAAAAACAGTCAG TGGTTCGATTGAGGTGGAACAATCAACTGTAAGCGGCAATTTGGAAACAACAAGTGGTGGGATAGATATAGATACAACAA AAATTAACGGTAATGTGCATACGACAAGTGGTTCAATTTCGATGAACGATTCAACTATTGATGGTAGCGTAACATGTAAG GCGGGGTCTGTAACAATTGTCAATTCAACAATTAAAGAAAGCCTTAATGTAACCAGTGAGAAAATAATTGTTGGTACAGC ATCTTGTATTGGAAAAATTAACATTTCCCCCCCTGAATCTGTAAATTTTAACATCATGAATTTTGGGAACGATAGTATAG TGATGGGAATGAGGAATTTTTGTATTTCAGGAGAGGTAAATTTTACCATTACTAATGGTAAAGTATTTGTTAATGAACAA AGGGTCGGCCATACAGCTTCGCAATCAACTTCGAAAAAAGTAGAAGAAGTTACTATTAATATCGCGAAAAATGCCAGTGT TAATGATATTGTTTTTTATACTAAAAAGTGCCATATCATTTTAGAAGGAAATGCTAAATATAACGGAGAAAAAAAGGATG GCATGCAATTCACCCATGTTAACGCACCGAAAAGTCATGCTTATGCGTAA
Upstream 100 bases:
>100_bases GTTTTAATGTATTATTGTTAATACTGATTGAGAATATTATCTAATCAGAAATAAACGAATAAAAAACTGTTTACTCATCA TTAATATAAGGATTTTTTGT
Downstream 100 bases:
>100_bases AATACGTATTTAGACTATCTCTTTGGCAATGTCCATTTTCATAAATGGGCATTGCCCATGGGTATTTTACCACACGACTT TAATAGCCGATTTTCAGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MPQVNNISTNNIHSAGFNNSNSIQKYTGAVSSISDDLRINNEKCKSDIGTISGDIKINRHSAVYGNVNSVSGDITVKNSI VDKDITTVSGDVNAVNSTIGKNIKTVSGSIEVEQSTVSGNLETTSGGIDIDTTKINGNVHTTSGSISMNDSTIDGSVTCK AGSVTIVNSTIKESLNVTSEKIIVGTASCIGKINISPPESVNFNIMNFGNDSIVMGMRNFCISGEVNFTITNGKVFVNEQ RVGHTASQSTSKKVEEVTINIAKNASVNDIVFYTKKCHIILEGNAKYNGEKKDGMQFTHVNAPKSHAYA
Sequences:
>Translated_309_residues MPQVNNISTNNIHSAGFNNSNSIQKYTGAVSSISDDLRINNEKCKSDIGTISGDIKINRHSAVYGNVNSVSGDITVKNSI VDKDITTVSGDVNAVNSTIGKNIKTVSGSIEVEQSTVSGNLETTSGGIDIDTTKINGNVHTTSGSISMNDSTIDGSVTCK AGSVTIVNSTIKESLNVTSEKIIVGTASCIGKINISPPESVNFNIMNFGNDSIVMGMRNFCISGEVNFTITNGKVFVNEQ RVGHTASQSTSKKVEEVTINIAKNASVNDIVFYTKKCHIILEGNAKYNGEKKDGMQFTHVNAPKSHAYA >Mature_308_residues PQVNNISTNNIHSAGFNNSNSIQKYTGAVSSISDDLRINNEKCKSDIGTISGDIKINRHSAVYGNVNSVSGDITVKNSIV DKDITTVSGDVNAVNSTIGKNIKTVSGSIEVEQSTVSGNLETTSGGIDIDTTKINGNVHTTSGSISMNDSTIDGSVTCKA GSVTIVNSTIKESLNVTSEKIIVGTASCIGKINISPPESVNFNIMNFGNDSIVMGMRNFCISGEVNFTITNGKVFVNEQR VGHTASQSTSKKVEEVTINIAKNASVNDIVFYTKKCHIILEGNAKYNGEKKDGMQFTHVNAPKSHAYA
Specific function: Unknown
COG id: COG3595
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32766; Mature: 32635
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQVNNISTNNIHSAGFNNSNSIQKYTGAVSSISDDLRINNEKCKSDIGTISGDIKINRH CCCCCCCCCCCEEECCCCCCCCHHHHHCHHHHCCCCEEECCHHHHHHHCCEECEEEEEEC SAVYGNVNSVSGDITVKNSIVDKDITTVSGDVNAVNSTIGKNIKTVSGSIEVEQSTVSGN EEEECCCCCCCCCEEEECCCCCCCCEEECCCCHHHHHHHCCCEEEEECEEEEEEEEECCC LETTSGGIDIDTTKINGNVHTTSGSISMNDSTIDGSVTCKAGSVTIVNSTIKESLNVTSE EEECCCCEEEEEEEECCEEEECCCEEEECCCCCCCEEEEECCCEEEEEHHHHHHCCCCCC KIIVGTASCIGKINISPPESVNFNIMNFGNDSIVMGMRNFCISGEVNFTITNGKVFVNEQ EEEEEEHHHEEEEECCCCCCCEEEEEEECCCEEEEEEHHEEECCEEEEEEECCEEEEECC RVGHTASQSTSKKVEEVTINIAKNASVNDIVFYTKKCHIILEGNAKYNGEKKDGMQFTHV CCCCCCCCHHHCEEEEEEEEEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEE NAPKSHAYA CCCCCCCCC >Mature Secondary Structure PQVNNISTNNIHSAGFNNSNSIQKYTGAVSSISDDLRINNEKCKSDIGTISGDIKINRH CCCCCCCCCCEEECCCCCCCCHHHHHCHHHHCCCCEEECCHHHHHHHCCEECEEEEEEC SAVYGNVNSVSGDITVKNSIVDKDITTVSGDVNAVNSTIGKNIKTVSGSIEVEQSTVSGN EEEECCCCCCCCCEEEECCCCCCCCEEECCCCHHHHHHHCCCEEEEECEEEEEEEEECCC LETTSGGIDIDTTKINGNVHTTSGSISMNDSTIDGSVTCKAGSVTIVNSTIKESLNVTSE EEECCCCEEEEEEEECCEEEECCCEEEECCCCCCCEEEEECCCEEEEEHHHHHHCCCCCC KIIVGTASCIGKINISPPESVNFNIMNFGNDSIVMGMRNFCISGEVNFTITNGKVFVNEQ EEEEEEHHHEEEEECCCCCCCEEEEEEECCCEEEEEEHHEEECCEEEEEEECCEEEEECC RVGHTASQSTSKKVEEVTINIAKNASVNDIVFYTKKCHIILEGNAKYNGEKKDGMQFTHV CCCCCCCCHHHCEEEEEEEEEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEE NAPKSHAYA CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA